Non-Coding RNA Search

Ss1.1-rplac_6634.5

Sequence:


               
               CCGCCGCCGCCGACAGCTGCCGCCGCCGCCGCCGCCGACAGCTGCCGCCACCGCCGAAAG
ACCGGCCCCTACCCCAGCCTCGGTAGCAGCGCCGCGGCTACACCGGCCGGCGGCGAGGGC
GAGCCTGCAGACCCCACCTGCGCTTTCCACAGTGTGCACCGCGCCCCGCATGTGACCTGG
CCAGGCCCCCGAGAGGTGTCCCCCGCAGCTCCAGCCCCAGGCTGCGCCCACCCGCCCCAA
CACCAGCTCTCCAGCCCGCCGGTTCGGGATGGCGGCAGCCAAGGCCGAGATGCAGCTGAT
GTCCCCACTGCAGATCTCCGACCCCTTCGGCTCCTTTCCACATTCGCCCACCATGGACAA
CTACCCTAAGCTGGAGGAGATGATGCTGCTGAGCAATGGGGCTCCCCAGTTCCTCGGTGC
CGCCGGAGCCCCCGAGGGCAGCGGCGGTAACAGCAACAGCAGCAGCAGCAGCGGGGGCGG
TGGAGGTGGAGGGGGCAGCAGCAACAGCAGCAGCAGCAGCGCCTTCAACCCTCAGGGGGA
GGCGGGCGAGCAGCCCTACGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCGCCGCCGACAGCTGCCGCCGCCGCCGCCGCCGACAGCTGCCGCCACCGCCGAAAG
ACCGGCCCCTACCCCAGCCTCGGTAGCAGCGCCGCGGCTACACCGGCCGGCGGCGAGGGC
GAGCCTGCAGACCCCACCTGCGCTTTCCACAGTGTGCACCGCGCCCCGCATGTGACCTGG
CCAGGCCCCCGAGAGGTGTCCCCCGCAGCTCCAGCCCCAGGCTGCGCCCACCCGCCCCAA
CACCAGCTCTCCAGCCCGCCGGTTCGGGATGGCGGCAGCCAAGGCCGAGATGCAGCTGAT
GTCCCCACTGCAGATCTCCGACCCCTTCGGCTCCTTTCCACATTCGCCCACCATGGACAA
CTACCCTAAGCTGGAGGAGATGATGCTGCTGAGCAATGGGGCTCCCCAGTTCCTCGGTGC
CGCCGGAGCCCCCGAGGGCAGCGGCGGTAACAGCAACAGCAGCAGCAGCAGCGGGGGCGG
TGGAGGTGGAGGGGGCAGCAGCAACAGCAGCAGCAGCAGCGCCTTCAACCCTCAGGGGGA
GGCGGGCGAGCAGCCCTACGAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|198607|gb|AAA39383.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|198607|gb|AAA39383.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               371-487, - strand, RNAz p=0.524869

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-487, - strand, RNAz p=0.524869

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-564, gnl|bosTau2|chr7 (34935360-34935913)
               

               
               15-564, gnl|Hg17|chr5 (137829095-137829645)
               

               
               15-564, gnl|Mm7|chr18 (35237336-35237876)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-564, gnl|bosTau2|chr7 (34935360-34935913)
               

               
               15-564, gnl|Hg17|chr5 (137829095-137829645)
               

               
               15-564, gnl|Mm7|chr18 (35237336-35237876)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	15-564, gnl\|bosTau2\|chr7 (34935360-34935913)
	15-564, gnl\|Hg17\|chr5 (137829095-137829645)
	15-564, gnl\|Mm7\|chr18 (35237336-35237876)