Non-Coding RNA Search

Ss1.1-rplac_6651.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGATGCAGGCCCACTTTATTGGCA
GAGTCCAGCCACGCTGGGCGGGCCGTCAGGCTTGCGCCGGCGGGGTGTTCGGGCCGCGGT
CCCGGCTCAGCATGCACGCCCCCGCAGCGCCCTGGGCTCCTCCCTGGGTCGAGGCTCAGA
GCTCCGGAGGGCCGAAGCCGGGTGGGCCGGTGGGGGTGAGGTCGGGGTACACCAGGAAGC
CGGAGAAGGTGATGTACTTGCCGTGGTTGCTGTAGGCGCCGTAGCCGTCGTGGTCGTGGC
TGAGCAGCCACACGGCGTCGCCGCGCCGCAGCGCCAGCATCACACTCTGGCTCTGCATCT
CGCGGCGCCTCGACGCGCCGTCGTCGTAAATCATGGCCTGCACCTCGTCTCGGTTCTTCA
TCAGTTTCACCGACAGCGTCTTGCGCGGCAGCTTGCCCAGTGTGAAGGAGAAGAAGTAGG
CGCCGGGCAGGCGGCAGCGGAACACGCCGGCCGCCGCGTCGAAGTCGCCGCCAATGTTGA
CCAGCTCCGTGTCGAAGGCGAGCGGCCGGTGCCGTGGCCCGGGAGCCGCGTCCGAGCCCA
CCAGGCTGCGCGTGCGTGCCGCCGAGAAGGCCGAGCGCGGCTCCGGGGCTGCAGGTGGCC
CGCCCACCGGCGCGTCGGCGTCTGCGTACACCAGGTAGCCGCTGAAAGTGGCGCCAGGCG
AACCAAGCGCGTACTGCGGGGCGCCGTGCAGCCGCAGCCACACCGTGTCGCCGTAGTCGA
GCTGCAGCATGGCGCTCTGGCTGGCGGCACGCCGCGTGCCGGGCCGCCGCTGCTCATCAA
AGGCCAGCGCCTGCACCTCGTCGCGGTTGCGCACCAGCATCACCGACAGGCTCTTGTGCG
GGGCCTTGCCGGCTGTGAAGGAGAAGAAGTAGGCCCCGGGCACGCGGCAGCGGAACTGGC
CGGTGGCCGCGTCGAAGTCTCCACCGATGTTCACGTACACCTTGTCGAAGGTCACTGCCA
TCTCCGACGTGCCCTCCAGGGGGGTGGTGCGTGCCGCCGAGAAGGCTGAGCGCAGCTCTG
TCGAGCCCAGGGCCCAGCAGGCGGCCGGGCCCAGCAGGCCCAGCAGGAGCGGCAGCATGG
CGCCTTGAAAACCCCTCAGGCTCTCAAGAAGATAAGTCCCCTTTTGACGGAAGAAGCCTT
ATTAATCCTGGCGGGGCGGCGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGATGCAGGCCCACTTTATTGGCA
GAGTCCAGCCACGCTGGGCGGGCCGTCAGGCTTGCGCCGGCGGGGTGTTCGGGCCGCGGT
CCCGGCTCAGCATGCACGCCCCCGCAGCGCCCTGGGCTCCTCCCTGGGTCGAGGCTCAGA
GCTCCGGAGGGCCGAAGCCGGGTGGGCCGGTGGGGGTGAGGTCGGGGTACACCAGGAAGC
CGGAGAAGGTGATGTACTTGCCGTGGTTGCTGTAGGCGCCGTAGCCGTCGTGGTCGTGGC
TGAGCAGCCACACGGCGTCGCCGCGCCGCAGCGCCAGCATCACACTCTGGCTCTGCATCT
CGCGGCGCCTCGACGCGCCGTCGTCGTAAATCATGGCCTGCACCTCGTCTCGGTTCTTCA
TCAGTTTCACCGACAGCGTCTTGCGCGGCAGCTTGCCCAGTGTGAAGGAGAAGAAGTAGG
CGCCGGGCAGGCGGCAGCGGAACACGCCGGCCGCCGCGTCGAAGTCGCCGCCAATGTTGA
CCAGCTCCGTGTCGAAGGCGAGCGGCCGGTGCCGTGGCCCGGGAGCCGCGTCCGAGCCCA
CCAGGCTGCGCGTGCGTGCCGCCGAGAAGGCCGAGCGCGGCTCCGGGGCTGCAGGTGGCC
CGCCCACCGGCGCGTCGGCGTCTGCGTACACCAGGTAGCCGCTGAAAGTGGCGCCAGGCG
AACCAAGCGCGTACTGCGGGGCGCCGTGCAGCCGCAGCCACACCGTGTCGCCGTAGTCGA
GCTGCAGCATGGCGCTCTGGCTGGCGGCACGCCGCGTGCCGGGCCGCCGCTGCTCATCAA
AGGCCAGCGCCTGCACCTCGTCGCGGTTGCGCACCAGCATCACCGACAGGCTCTTGTGCG
GGGCCTTGCCGGCTGTGAAGGAGAAGAAGTAGGCCCCGGGCACGCGGCAGCGGAACTGGC
CGGTGGCCGCGTCGAAGTCTCCACCGATGTTCACGTACACCTTGTCGAAGGTCACTGCCA
TCTCCGACGTGCCCTCCAGGGGGGTGGTGCGTGCCGCCGAGAAGGCTGAGCGCAGCTCTG
TCGAGCCCAGGGCCCAGCAGGCGGCCGGGCCCAGCAGGCCCAGCAGGAGCGGCAGCATGG
CGCCTTGAAAACCCCTCAGGCTCTCAAGAAGATAAGTCCCCTTTTGACGGAAGAAGCCTT
ATTAATCCTGGCGGGGCGGCGGTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12835488|dbj|BAB23268.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12835488|dbj|BAB23268.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               510-1145, gnl|bosTau2|chr15 (48757942-48757293)
               

               
               510-1145, gnl|Hg17|chr11 (47567808-47568945)
               

               
               510-1145, gnl|Mm7|chr2 (90740686-90740094)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               510-1145, gnl|bosTau2|chr15 (48757942-48757293)
               

               
               510-1145, gnl|Hg17|chr11 (47567808-47568945)
               

               
               510-1145, gnl|Mm7|chr2 (90740686-90740094)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbr (1.27975)
               

               
               ute (1.06228)
               

               
               pla (0.935704)
               

               
               fce (0.543183)
               

               
               ecc (0.345105)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.27975)
               

               
               ute (1.06228)
               

               
               pla (0.935704)
               

               
               fce (0.543183)
               

               
               ecc (0.345105)
               

               
               fhi (0.169578)
               

               
               ebs (0.118301)

	510-1145, gnl\|bosTau2\|chr15 (48757942-48757293)
	510-1145, gnl\|Hg17\|chr11 (47567808-47568945)
	510-1145, gnl\|Mm7\|chr2 (90740686-90740094)

	cbr (1.27975)
	ute (1.06228)
	pla (0.935704)
	fce (0.543183)
	ecc (0.345105)
	fhi (0.169578)
	ebs (0.118301)