Ss1.1-rplac_6669.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTCGAAACAGTTTGGAAATATCCTCATCCTCAGTGGGGATGTTAATTTGGCGGAAAGT GATTTGGCATACACCCGGGCCATCATGGGCAGCGGCAAAGAAGATTACACTGGCAAAGAT GTACTGATTCTGGGAGGTGGAGATGGGGGCATATTATGTGAAATAGTCAAACTAAAACCA AAGATGGTCACTATGGTAGAGATTGACCAAATGGTGATTGACGGATGTAAGAAATACATG AGAAAAACGTGTGGTGACGTCTTAGACAATCTTAAAGGAGACTGCTATCAGGTTCTAATA GAAGACTGCATTCCAGTACTGAAGAGGTACGCCAAAGAAGGGAGAGAGTTTGATTATGTG ATTAATGATTTGACAGCCGTTCCAATCTCCACATCTCCGGAAGAAGATTCCACGTGGGAG TTTCTCAGACTGATTCTTGACCTCTCAATGAAAGTATTGAAACAGGATGGAAAATATTTT ACACAGGGGAACTGTGTCAATTTGACGGAGGCCCTGTCACTCTATGAAGAACAGCTGGGG CGCCTGTATTGTCCTGTGGAATTCTCGAAGGAGATCGTCTGTGTCCCTTCATACTTGGAA TTGTGGGTATTTTACACTGTTTGGAAGAAAGCTAAACCTTGAAAATCAGTTTCCCCAATC ACGTGTGCTGCAAATAGCCTTCCTGACCTTCATATGCTGTACATGACATCGAAACGAGTC AGGCAATTGATTGTGAATTCCTTCAAGTTTCCTTTTTTAATTTTTTTTAATTTAAAAATC GAATGGAAAATGTATATTTTGATGAGCTAGGGTGTTTTTTTTTTTTTTTTGAAAGTCAGC TGAAGGATGATTAGACAGCACAGTGAAGGCTGCTAAATGCACTGAACCCCTAGAATGTGA TTTTTTTTTTCTTTGTGGGCTTTTTTGTTCTTGTTTTGGTAGACTTTGAATTTGGTTGTT TGGAGGAATGAACATTGTTTTCTTCTGGAGGGATGTTCTTAAGGGAGTTTATTTCACCCC CAAATTGACATAGATATTAAAATTTGGTGCTTATAAGGAAAGACTTAAAAAAAATGAATA GCATTGCTTCGATTAAAATTGCAAATGAGAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTCGAAACAGTTTGGAAATATCCTCATCCTCAGTGGGGATGTTAATTTGGCGGAAAGT GATTTGGCATACACCCGGGCCATCATGGGCAGCGGCAAAGAAGATTACACTGGCAAAGAT GTACTGATTCTGGGAGGTGGAGATGGGGGCATATTATGTGAAATAGTCAAACTAAAACCA AAGATGGTCACTATGGTAGAGATTGACCAAATGGTGATTGACGGATGTAAGAAATACATG AGAAAAACGTGTGGTGACGTCTTAGACAATCTTAAAGGAGACTGCTATCAGGTTCTAATA GAAGACTGCATTCCAGTACTGAAGAGGTACGCCAAAGAAGGGAGAGAGTTTGATTATGTG ATTAATGATTTGACAGCCGTTCCAATCTCCACATCTCCGGAAGAAGATTCCACGTGGGAG TTTCTCAGACTGATTCTTGACCTCTCAATGAAAGTATTGAAACAGGATGGAAAATATTTT ACACAGGGGAACTGTGTCAATTTGACGGAGGCCCTGTCACTCTATGAAGAACAGCTGGGG CGCCTGTATTGTCCTGTGGAATTCTCGAAGGAGATCGTCTGTGTCCCTTCATACTTGGAA TTGTGGGTATTTTACACTGTTTGGAAGAAAGCTAAACCTTGAAAATCAGTTTCCCCAATC ACGTGTGCTGCAAATAGCCTTCCTGACCTTCATATGCTGTACATGACATCGAAACGAGTC AGGCAATTGATTGTGAATTCCTTCAAGTTTCCTTTTTTAATTTTTTTTAATTTAAAAATC GAATGGAAAATGTATATTTTGATGAGCTAGGGTGTTTTTTTTTTTTTTTTGAAAGTCAGC TGAAGGATGATTAGACAGCACAGTGAAGGCTGCTAAATGCACTGAACCCCTAGAATGTGA TTTTTTTTTTCTTTGTGGGCTTTTTTGTTCTTGTTTTGGTAGACTTTGAATTTGGTTGTT TGGAGGAATGAACATTGTTTTCTTCTGGAGGGATGTTCTTAAGGGAGTTTATTTCACCCC CAAATTGACATAGATATTAAAATTTGGTGCTTATAAGGAAAGACTTAAAAAAAATGAATA GCATTGCTTCGATTAAAATTGCAAATGAGAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 274-391, - strand, RNAz p=0.602615 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 274-391, - strand, RNAz p=0.602615 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 82-391, gnl|bosTau2|chr28 (34854556-34854848) | |
| 82-391, gnl|Hg17|chr1 (157678382-157678691) | |
| 82-391, gnl|Mm7|chrX (58170730-58170426) | |
| 485-602, gnl|bosTau2|chrX (38653524-38653407) | |
| 485-602, gnl|canFam2|chrX (17752057-17752185) | |
| 485-602, gnl|danRer3|chr21 (12492003-12492129) | |
| 485-602, gnl|dasNov1|scaffold_47113 (6302-6429) | |
| 485-602, gnl|echTel1|scaffold_206303 (9918-10035) | |
| 485-602, gnl|fr1|chrUn (4878478-4878606) | |
| 485-602, gnl|galGal2|chr1 (112356183-112356055) | |
| 485-602, gnl|hg17|chrX (21770371-21770499) | |
| 485-602, gnl|Hg17|chrX (21770370-21770487) | |
| 485-602, gnl|loxAfr1|scaffold_3454 (83364-83492) | |
| 485-602, gnl|mm7|chrX (152221835-152221707) | |
| 485-602, gnl|Mm7|chrX (152221834-152221717) | |
| 485-602, gnl|monDom2|scaffold_48 (10962499-10962373) | |
| 485-602, gnl|oryCun1|scaffold_208038 (114919-114791) | |
| 485-602, gnl|panTro1|chrX (22537336-22537464) | |
| 485-602, gnl|rheMac2|chrX (19761013-19761141) | |
| 485-602, gnl|rn3|chrX (58922613-58922741) | |
| 485-602, gnl|tetNig1|chr7 (4118565-4118439) | |
| 485-602, gnl|xenTro1|scaffold_461 (803854-803981) | |
| 603-1112, gnl|bosTau2|chrX (38652140-38651631) | |
| 603-1112, gnl|Hg17|chrX (21772087-21772612) | |
| 603-1112, gnl|Mm7|chrX (152220538-152220017) | |
| 661-1057, gnl|bosTau2|chr19 (26072831-26073235) | |
| 661-1057, gnl|Hg17|chr5 (43243690-43244105) | |
| 661-1057, gnl|Mm7|chrX (152220487-152220069) | |
| 724-930, gnl|bosTau2|chr17 (26415649-26415451) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 82-391, gnl|bosTau2|chr28 (34854556-34854848) | |
| 82-391, gnl|Hg17|chr1 (157678382-157678691) | |
| 82-391, gnl|Mm7|chrX (58170730-58170426) | |
| 485-602, gnl|bosTau2|chrX (38653524-38653407) | |
| 485-602, gnl|canFam2|chrX (17752057-17752185) | |
| 485-602, gnl|danRer3|chr21 (12492003-12492129) | |
| 485-602, gnl|dasNov1|scaffold_47113 (6302-6429) | |
| 485-602, gnl|echTel1|scaffold_206303 (9918-10035) | |
| 485-602, gnl|fr1|chrUn (4878478-4878606) | |
| 485-602, gnl|galGal2|chr1 (112356183-112356055) | |
| 485-602, gnl|hg17|chrX (21770371-21770499) | |
| 485-602, gnl|Hg17|chrX (21770370-21770487) | |
| 485-602, gnl|loxAfr1|scaffold_3454 (83364-83492) | |
| 485-602, gnl|mm7|chrX (152221835-152221707) | |
| 485-602, gnl|Mm7|chrX (152221834-152221717) | |
| 485-602, gnl|monDom2|scaffold_48 (10962499-10962373) | |
| 485-602, gnl|oryCun1|scaffold_208038 (114919-114791) | |
| 485-602, gnl|panTro1|chrX (22537336-22537464) | |
| 485-602, gnl|rheMac2|chrX (19761013-19761141) | |
| 485-602, gnl|rn3|chrX (58922613-58922741) | |
| 485-602, gnl|tetNig1|chr7 (4118565-4118439) | |
| 485-602, gnl|xenTro1|scaffold_461 (803854-803981) | |
| 603-1112, gnl|bosTau2|chrX (38652140-38651631) | |
| 603-1112, gnl|Hg17|chrX (21772087-21772612) | |
| 603-1112, gnl|Mm7|chrX (152220538-152220017) | |
| 661-1057, gnl|bosTau2|chr19 (26072831-26073235) | |
| 661-1057, gnl|Hg17|chr5 (43243690-43244105) | |
| 661-1057, gnl|Mm7|chrX (152220487-152220069) | |
| 724-930, gnl|bosTau2|chr17 (26415649-26415451) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| sug (0.381874) | |
| lun (0.300978) | |
| fat (0.294855) | |
| med (0.232504) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| isp (0.150376) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.381874) | |
| lun (0.300978) | |
| fat (0.294855) | |
| med (0.232504) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| isp (0.150376) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| nbm (0.0993246) |