Ss1.1-rplac_6673.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTGTGCTCAGAAAGTGTTTGCTGATATTAATAATATTGAAGTCACAAAGTATGATTTC CTTTGTAGACAAGCGTGAACATGGGGAAGCAAAAGAAAACACGGAAGTATGCTATCATGA AGCGAATGCTTAGTCTCAGAGATCAGAGACTTAAAGAAAAGGATAGATTAAAACCGAAAA AGAAAGAAAAGAAAGATCCCAGTGCACTCAAGGAAAGAGAAGTCCCCCAACACCCTTCCT GCCTATTCTTCCAATATAATACACAGCTGGGCCCACCTTACCACATCCTGGTTGATACCA ACTTTATCAACTTTTCCATTAAAGCCAAACTGGACTTAGTGCAGTCAATGATGGACTGTC TATATGCCAAGTGTATCCCGTGTATAACTGACTGTGTAATGGCTGAAATTGAGAAATTGG GGCAGAAGTATCGAGTGGCTCTAAGGATTGCCAAGGATCCAAGATTTGAACGATTACCCT GCACACACAAAGGAACCTATGCAGATGACTGCTTAGTACAAAGAGTAACCCAGCACAAGT GTTACATTGTGGCCACAGTTGACCGGGACCTTAAACGAAGAATCCGGAAGATCCCTGGAG TTCCCATCATGTACATTTCTAACCATAGGTACAACATTGAGCGGATGCCCGATGATTATG GAGCCCCTCGGTTCTAATCCTTAAAAGACAAAGTTCCTCTGCCTCCTGTGGACCAACTTT CTCCTTTGCTAACTCATTAATCATGCCATAGCATGAGTTCTTCCACTCACCCATTTGCTC TGAATGAGCTGAGTATGGTTAAATACACCCACTTTTTAATATTGTGTTGAAAATGATATA TTTTTATCATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTGTGCTCAGAAAGTGTTTGCTGATATTAATAATATTGAAGTCACAAAGTATGATTTC CTTTGTAGACAAGCGTGAACATGGGGAAGCAAAAGAAAACACGGAAGTATGCTATCATGA AGCGAATGCTTAGTCTCAGAGATCAGAGACTTAAAGAAAAGGATAGATTAAAACCGAAAA AGAAAGAAAAGAAAGATCCCAGTGCACTCAAGGAAAGAGAAGTCCCCCAACACCCTTCCT GCCTATTCTTCCAATATAATACACAGCTGGGCCCACCTTACCACATCCTGGTTGATACCA ACTTTATCAACTTTTCCATTAAAGCCAAACTGGACTTAGTGCAGTCAATGATGGACTGTC TATATGCCAAGTGTATCCCGTGTATAACTGACTGTGTAATGGCTGAAATTGAGAAATTGG GGCAGAAGTATCGAGTGGCTCTAAGGATTGCCAAGGATCCAAGATTTGAACGATTACCCT GCACACACAAAGGAACCTATGCAGATGACTGCTTAGTACAAAGAGTAACCCAGCACAAGT GTTACATTGTGGCCACAGTTGACCGGGACCTTAAACGAAGAATCCGGAAGATCCCTGGAG TTCCCATCATGTACATTTCTAACCATAGGTACAACATTGAGCGGATGCCCGATGATTATG GAGCCCCTCGGTTCTAATCCTTAAAAGACAAAGTTCCTCTGCCTCCTGTGGACCAACTTT CTCCTTTGCTAACTCATTAATCATGCCATAGCATGAGTTCTTCCACTCACCCATTTGCTC TGAATGAGCTGAGTATGGTTAAATACACCCACTTTTTAATATTGTGTTGAAAATGATATA TTTTTATCATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 666-852, - strand, RNAz p=0.997258 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 666-852, - strand, RNAz p=0.997258 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 178-563, gnl|bosTau2|chr9 (20207493-20207131) | |
| 178-563, gnl|Hg17|chr6 (111781606-111781918) | |
| 178-563, gnl|Mm7|chr9 (95071553-95072036) | |
| 224-374, gnl|bosTau2|chr10 (56321235-56321385) | |
| 224-374, gnl|canFam2|chr8 (50881639-50881801) | |
| 224-374, gnl|danRer3|chr15 (29659268-29659447) | |
| 224-374, gnl|dasNov1|scaffold_3500 (4365-4181) | |
| 224-374, gnl|echTel1|scaffold_310755 (90547-90742) | |
| 224-374, gnl|fr1|chrUn (139661659-139661472) | |
| 224-374, gnl|galGal2|chr5 (34887281-34887456) | |
| 224-374, gnl|hg17|chr14 (74252372-74252567) | |
| 224-374, gnl|Hg17|chr14 (74252407-74252557) | |
| 224-374, gnl|loxAfr1|scaffold_82344 (6289-6092) | |
| 224-374, gnl|mm7|chr12 (82973891-82974089) | |
| 224-374, gnl|Mm7|chr12 (82973929-82974079) | |
| 224-374, gnl|monDom2|scaffold_8 (59837464-59837266) | |
| 224-374, gnl|oryCun1|scaffold_210956 (147089-147286) | |
| 224-374, gnl|panTro1|chr15 (74253232-74253427) | |
| 224-374, gnl|rheMac2|chr7 (137824071-137824266) | |
| 224-374, gnl|rn3|chr6 (109022775-109022973) | |
| 224-374, gnl|tetNig1|chr10 (4546825-4547003) | |
| 224-374, gnl|xenTro1|scaffold_423 (411270-411078) | |
| 627-852, gnl|bosTau2|chr10 (56328416-56328642) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 178-563, gnl|bosTau2|chr9 (20207493-20207131) | |
| 178-563, gnl|Hg17|chr6 (111781606-111781918) | |
| 178-563, gnl|Mm7|chr9 (95071553-95072036) | |
| 224-374, gnl|bosTau2|chr10 (56321235-56321385) | |
| 224-374, gnl|canFam2|chr8 (50881639-50881801) | |
| 224-374, gnl|danRer3|chr15 (29659268-29659447) | |
| 224-374, gnl|dasNov1|scaffold_3500 (4365-4181) | |
| 224-374, gnl|echTel1|scaffold_310755 (90547-90742) | |
| 224-374, gnl|fr1|chrUn (139661659-139661472) | |
| 224-374, gnl|galGal2|chr5 (34887281-34887456) | |
| 224-374, gnl|hg17|chr14 (74252372-74252567) | |
| 224-374, gnl|Hg17|chr14 (74252407-74252557) | |
| 224-374, gnl|loxAfr1|scaffold_82344 (6289-6092) | |
| 224-374, gnl|mm7|chr12 (82973891-82974089) | |
| 224-374, gnl|Mm7|chr12 (82973929-82974079) | |
| 224-374, gnl|monDom2|scaffold_8 (59837464-59837266) | |
| 224-374, gnl|oryCun1|scaffold_210956 (147089-147286) | |
| 224-374, gnl|panTro1|chr15 (74253232-74253427) | |
| 224-374, gnl|rheMac2|chr7 (137824071-137824266) | |
| 224-374, gnl|rn3|chr6 (109022775-109022973) | |
| 224-374, gnl|tetNig1|chr10 (4546825-4547003) | |
| 224-374, gnl|xenTro1|scaffold_423 (411270-411078) | |
| 627-852, gnl|bosTau2|chr10 (56328416-56328642) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cte (0.29274) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| ova (0.258264) | |
| pgl (0.236967) | |
| col (0.195008) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| gul (0.177588) | |
| sin (0.174948) | |
| eye (0.170503) | |
| lun (0.150489) | |
| ski (0.146735) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| ova (0.258264) | |
| pgl (0.236967) | |
| col (0.195008) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| gul (0.177588) | |
| sin (0.174948) | |
| eye (0.170503) | |
| lun (0.150489) | |
| ski (0.146735) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| spc (0.113366) | |
| ldo (0.0970026) |