Non-Coding RNA Search

Ss1.1-rplac_6682.5

Sequence:


               
               CTGACCCGTTCCTCGGGATGATGATGGGCCTCGGAGGAGGCATGGACTTCGATTCAAAAA
AGGCGTACAGGGACGTGGCCTGGCTGGGTGACTGCGACCAGGGCTGCTTGGCCCTCGCTG
ATCTCCTCGGATGGAAGAAGGAGCTGGAGGACCTTGTCCGGAAAGAGCATGCCAGCATAG
ATGCCCAGTCGGGATCGGGCACCCCCAATCCCACCACTTCAGCTTCCCCCAGGAAGTCTC
CGCCTCCCGCCAAGGCAGAGGCCAGGACCTCGGAGGGAGAGAAACCCCAGTGACAGCTGC
GTCTCCCAGGCAGGACGCCCAGCTTTGGGACAGCTGAGTCCCAACCAGCCCTGGCCTCCT
CTAACTTACAGCTCTTTTCTGGGGAGCTCAGAACGTTTCCGCAATCTTTTAACTACTCCC
TCCTAAACCTGGGGTCCCGGCAGCCCCGACCCCAGCAAATGTCTAACATTCTTTGGGGCC
GAGGCTTGGGCAGCCCGCCTCTAACAGCCCACAGCCTCTAACCACCCCCGGGACTGAGGA
TCAGCCTCCCCTAATCTCTAACTGCTCACGGGGCCGGGTGTACCTCCAAACCTCTAACTG
TCCCAGGCCAAGGGTCCCCAGGGCCCCCACGCCCTCTACTGTCCCCAGGAGCCTGTGACC
AAGTAGCTGAAACCTAACCTACCCGTGGGTGGGGGGATCTGAGCCTCAAGGTCTCCCAAG
TCTCTTCCTCCAGCTCCCCAAGTGGGTGCTGGGCCCCCTCACTTGGGACCCACTTCCCAT
GCCAAGGAGGGCAGATGGTGTCACTTATTAGAGATGAATTAAAAACAAAGAACAACTAAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACCCGTTCCTCGGGATGATGATGGGCCTCGGAGGAGGCATGGACTTCGATTCAAAAA
AGGCGTACAGGGACGTGGCCTGGCTGGGTGACTGCGACCAGGGCTGCTTGGCCCTCGCTG
ATCTCCTCGGATGGAAGAAGGAGCTGGAGGACCTTGTCCGGAAAGAGCATGCCAGCATAG
ATGCCCAGTCGGGATCGGGCACCCCCAATCCCACCACTTCAGCTTCCCCCAGGAAGTCTC
CGCCTCCCGCCAAGGCAGAGGCCAGGACCTCGGAGGGAGAGAAACCCCAGTGACAGCTGC
GTCTCCCAGGCAGGACGCCCAGCTTTGGGACAGCTGAGTCCCAACCAGCCCTGGCCTCCT
CTAACTTACAGCTCTTTTCTGGGGAGCTCAGAACGTTTCCGCAATCTTTTAACTACTCCC
TCCTAAACCTGGGGTCCCGGCAGCCCCGACCCCAGCAAATGTCTAACATTCTTTGGGGCC
GAGGCTTGGGCAGCCCGCCTCTAACAGCCCACAGCCTCTAACCACCCCCGGGACTGAGGA
TCAGCCTCCCCTAATCTCTAACTGCTCACGGGGCCGGGTGTACCTCCAAACCTCTAACTG
TCCCAGGCCAAGGGTCCCCAGGGCCCCCACGCCCTCTACTGTCCCCAGGAGCCTGTGACC
AAGTAGCTGAAACCTAACCTACCCGTGGGTGGGGGGATCTGAGCCTCAAGGTCTCCCAAG
TCTCTTCCTCCAGCTCCCCAAGTGGGTGCTGGGCCCCCTCACTTGGGACCCACTTCCCAT
GCCAAGGAGGGCAGATGGTGTCACTTATTAGAGATGAATTAAAAACAAAGAACAACTAAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61858030|ref|XP_580596.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61858030|ref|XP_580596.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               175-518, - strand, RNAz p=0.949953
               

               
               597-690, - strand, RNAz p=0.886032

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-518, - strand, RNAz p=0.949953
               

               
               597-690, - strand, RNAz p=0.886032

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               136-718, gnl|bosTau2|chr18 (42147486-42148067)
               

               
               136-718, gnl|Hg17|chr19 (44061792-44061196)
               

               
               136-718, gnl|Mm7|chr7 (25722147-25722722)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-718, gnl|bosTau2|chr18 (42147486-42148067)
               

               
               136-718, gnl|Hg17|chr19 (44061792-44061196)
               

               
               136-718, gnl|Mm7|chr7 (25722147-25722722)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               fbs (0.876732)
               

               
               ill (0.351185)
               

               
               cga (0.279096)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.876732)
               

               
               ill (0.351185)
               

               
               cga (0.279096)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	175-518, - strand, RNAz p=0.949953
	597-690, - strand, RNAz p=0.886032

	136-718, gnl\|bosTau2\|chr18 (42147486-42148067)
	136-718, gnl\|Hg17\|chr19 (44061792-44061196)
	136-718, gnl\|Mm7\|chr7 (25722147-25722722)

	fbs (0.876732)
	ill (0.351185)
	cga (0.279096)
	fty (0.17584)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	lnt (0.142308)
	pla (0.133672)
	ebs (0.118301)
	cty (0.10408)