Non-Coding RNA Search

Ss1.1-rplac_7262.5

Sequence:


               
               AAATCCCTTCTCTACTCCGGAAAAAGTAGAGTTTCAGTGTGGCCAGAAGGCTCTGAGGCC
CCGCTTTAAGATTGTTGGGGGAAAAAGCACCACCATCGAGAACCAGCCTTGGTTTGCAGC
CATCTATAGAAGGCATCGTGGAGGCTCTGTCACCTATGTGTGTGGTGGCAGCCTCATCAG
TCCCTGCTGGGTGGTCAGCGCCACCCACTGCTTCATCAATTACCAACATAAGGAAGACTA
CATTGTCTACCTGGGTCGGCAAACCCTTCACTCCAGCACTCATGGGGAGATGAAATTTGA
GGTGGAAAAGCTCATCTTGCATGAGGACTACAGTGCTGACAGCCTTGCTCACCACAATGA
TATTGCCTTGCTGAAGATCCGTACCGACAAGGGCCAGTGTGCACAGCCATCCCGCTCCAT
ACAGACCATCTGCCTGCCCCCAGTGAATGGCGATGCCCATTTTGGCGCAAGCTGTGAAAT
CGTCGGCTTTGGAAAAGAAGATCCCTCTGACTACCTCTATCCAGAGCAGCTGAAAATGAC
TGTTGTGAAGCTAGTTTCCCACCGGGAGTGTCAGCAGCCCCATTACTACGGCAGCGAAGT
CACCACCAAAATGCTGTGTGCTGCTGACCCACAGTGGAAAACGGATTCCTGCCAGGGAGA
CTCCGGGGGGCCACTGGTCTGCTCCACCCAAGGCCGCCTGACTCTGACTGGGATTGTGAG
CTGGGGCCGTGAATGTGCCATGAAGGACAAACCCGGCGTCTACACAAGGGTCTCACGCTT
CCTGACCTGGATCCACACTCATGTTGGGGGAGAGAATGGCATAGCCCACTGAGGGCCCCC
AGAGAACCAAGGGAAGAGAGGGGCACCACCCATTCCCATGCTGACTGTCAAGTTTTTGCA
GTAAGGCCATCTGCACAGCTGTATATAAGGAAGATACTGAGGAAGATGGGCTCTGCAGAG
ATGGTTTGCTTGGGCTGCCCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCCCTTCTCTACTCCGGAAAAAGTAGAGTTTCAGTGTGGCCAGAAGGCTCTGAGGCC
CCGCTTTAAGATTGTTGGGGGAAAAAGCACCACCATCGAGAACCAGCCTTGGTTTGCAGC
CATCTATAGAAGGCATCGTGGAGGCTCTGTCACCTATGTGTGTGGTGGCAGCCTCATCAG
TCCCTGCTGGGTGGTCAGCGCCACCCACTGCTTCATCAATTACCAACATAAGGAAGACTA
CATTGTCTACCTGGGTCGGCAAACCCTTCACTCCAGCACTCATGGGGAGATGAAATTTGA
GGTGGAAAAGCTCATCTTGCATGAGGACTACAGTGCTGACAGCCTTGCTCACCACAATGA
TATTGCCTTGCTGAAGATCCGTACCGACAAGGGCCAGTGTGCACAGCCATCCCGCTCCAT
ACAGACCATCTGCCTGCCCCCAGTGAATGGCGATGCCCATTTTGGCGCAAGCTGTGAAAT
CGTCGGCTTTGGAAAAGAAGATCCCTCTGACTACCTCTATCCAGAGCAGCTGAAAATGAC
TGTTGTGAAGCTAGTTTCCCACCGGGAGTGTCAGCAGCCCCATTACTACGGCAGCGAAGT
CACCACCAAAATGCTGTGTGCTGCTGACCCACAGTGGAAAACGGATTCCTGCCAGGGAGA
CTCCGGGGGGCCACTGGTCTGCTCCACCCAAGGCCGCCTGACTCTGACTGGGATTGTGAG
CTGGGGCCGTGAATGTGCCATGAAGGACAAACCCGGCGTCTACACAAGGGTCTCACGCTT
CCTGACCTGGATCCACACTCATGTTGGGGGAGAGAATGGCATAGCCCACTGAGGGCCCCC
AGAGAACCAAGGGAAGAGAGGGGCACCACCCATTCCCATGCTGACTGTCAAGTTTTTGCA
GTAAGGCCATCTGCACAGCTGTATATAAGGAAGATACTGAGGAAGATGGGCTCTGCAGAG
ATGGTTTGCTTGGGCTGCCCACCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6SLL2_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6SLL2_CANFA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               100-216, + strand, RNAz p=0.939559

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-216, + strand, RNAz p=0.939559

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-216, gnl|bosTau2|chr28 (23040065-23040280)
               

               
               1-216, gnl|Hg17|chr10 (75343307-75343522)
               

               
               1-216, gnl|Mm7|chr14 (18495893-18496111)
               


               
               219-365, gnl|bosTau2|chr28 (23040493-23040639)
               

               
               219-365, gnl|canFam2|chr4 (27542072-27542582)
               

               
               219-365, gnl|dasNov1|scaffold_104269 (4968-4422)
               

               
               219-365, gnl|echTel1|scaffold_313735 (44793-45311)
               

               
               219-365, gnl|hg17|chr10 (75343522-75344075)
               

               
               219-365, gnl|Hg17|chr10 (75343746-75343892)
               

               
               219-365, gnl|mm7|chr14 (18496111-18496616)
               

               
               219-365, gnl|Mm7|chr14 (18496334-18496480)
               

               
               219-365, gnl|monDom2|scaffold_14 (1913401-1913976)
               

               
               219-365, gnl|oryCun1|scaffold_185424 (6842-7368)
               

               
               219-365, gnl|panTro1|chr8 (76583325-76583878)
               

               
               219-365, gnl|rheMac2|chr9 (63100927-63100369)
               

               
               219-365, gnl|rn3|chr15 (3683447-3682939)
               


               
               653-980, gnl|bosTau2|chr28 (23042497-23042816)
               

               
               653-980, gnl|Hg17|chr10 (75346150-75346462)
               

               
               653-980, gnl|Mm7|chr14 (18498828-18499144)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-216, gnl|bosTau2|chr28 (23040065-23040280)
               

               
               1-216, gnl|Hg17|chr10 (75343307-75343522)
               

               
               1-216, gnl|Mm7|chr14 (18495893-18496111)
               


               
               219-365, gnl|bosTau2|chr28 (23040493-23040639)
               

               
               219-365, gnl|canFam2|chr4 (27542072-27542582)
               

               
               219-365, gnl|dasNov1|scaffold_104269 (4968-4422)
               

               
               219-365, gnl|echTel1|scaffold_313735 (44793-45311)
               

               
               219-365, gnl|hg17|chr10 (75343522-75344075)
               

               
               219-365, gnl|Hg17|chr10 (75343746-75343892)
               

               
               219-365, gnl|mm7|chr14 (18496111-18496616)
               

               
               219-365, gnl|Mm7|chr14 (18496334-18496480)
               

               
               219-365, gnl|monDom2|scaffold_14 (1913401-1913976)
               

               
               219-365, gnl|oryCun1|scaffold_185424 (6842-7368)
               

               
               219-365, gnl|panTro1|chr8 (76583325-76583878)
               

               
               219-365, gnl|rheMac2|chr9 (63100927-63100369)
               

               
               219-365, gnl|rn3|chr15 (3683447-3682939)
               


               
               653-980, gnl|bosTau2|chr28 (23042497-23042816)
               

               
               653-980, gnl|Hg17|chr10 (75346150-75346462)
               

               
               653-980, gnl|Mm7|chr14 (18498828-18499144)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               pla (0.401016)
               

               
               lnt (0.142308)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               lnt (0.142308)
               

               
               ldo (0.0970026)

	1-216, gnl\|bosTau2\|chr28 (23040065-23040280)
	1-216, gnl\|Hg17\|chr10 (75343307-75343522)
	1-216, gnl\|Mm7\|chr14 (18495893-18496111)

	219-365, gnl\|bosTau2\|chr28 (23040493-23040639)
	219-365, gnl\|canFam2\|chr4 (27542072-27542582)
	219-365, gnl\|dasNov1\|scaffold_104269 (4968-4422)
	219-365, gnl\|echTel1\|scaffold_313735 (44793-45311)
	219-365, gnl\|hg17\|chr10 (75343522-75344075)
	219-365, gnl\|Hg17\|chr10 (75343746-75343892)
	219-365, gnl\|mm7\|chr14 (18496111-18496616)
	219-365, gnl\|Mm7\|chr14 (18496334-18496480)
	219-365, gnl\|monDom2\|scaffold_14 (1913401-1913976)
	219-365, gnl\|oryCun1\|scaffold_185424 (6842-7368)
	219-365, gnl\|panTro1\|chr8 (76583325-76583878)
	219-365, gnl\|rheMac2\|chr9 (63100927-63100369)
	219-365, gnl\|rn3\|chr15 (3683447-3682939)

	653-980, gnl\|bosTau2\|chr28 (23042497-23042816)
	653-980, gnl\|Hg17\|chr10 (75346150-75346462)
	653-980, gnl\|Mm7\|chr14 (18498828-18499144)