Non-Coding RNA Search

Ss1.1-rplac_7313.5

Sequence:


               
               NTATTGGATTATTTTGAATAAAAC------------------------------------
------------------------------------------------------------
------------CAAAAAAAAAAAAAAAAAAAAAAA------------ATGGTTGAAANT
TGCTCCTTCCTGGGAGCCACAGAAGCGGATGAAAAATGCTGGGAACCTGAAAAAAATGTG
TGGGAATGATACTAGGCTCAAACTCAGGTCTAAGGCACCTTTGAGAAATGAAAACCATGA
AATCTTGTAAGGTGCTACAGAAAGACCTTGTAGCATAGCTGATCCAGGGAATCACAAGAC
GACTTTATGGATGATGAAAAGAGCCTCCTAAGCCTTTCTACAGTGATGTCTCTAGTGTTC
AATGTTGTTTCTACTTTAATGGCATAGCCCTAGTAAATAGTCAAACTAATCATTAAGTTT
ATTAAAAAAAACCTCTTAACCTCGTAACCCCTGTTATACTCAAATATACTCAAACACCGC
AGCTGAGAATATCCTAATTCATGAACCGTGATGAACTGTGACAATTCCACCAGGAATAAG
ATCAGCGTTTTAGGCGCTGCTGTTGAGAACGTAGGACGATATTTTATGGTTACCCTTATA
TGTTCTTTTATGTGCGTTTGAGTATATACATAAACGTATGTATATACAGGATTTTTTCAG
CCCGACTCACTCTTTGGCAATTGATCCAAATCAGTTGGATTTGGAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               NTATTGGATTATTTTGAATAAAAC------------------------------------
------------------------------------------------------------
------------CAAAAAAAAAAAAAAAAAAAAAAA------------ATGGTTGAAANT
TGCTCCTTCCTGGGAGCCACAGAAGCGGATGAAAAATGCTGGGAACCTGAAAAAAATGTG
TGGGAATGATACTAGGCTCAAACTCAGGTCTAAGGCACCTTTGAGAAATGAAAACCATGA
AATCTTGTAAGGTGCTACAGAAAGACCTTGTAGCATAGCTGATCCAGGGAATCACAAGAC
GACTTTATGGATGATGAAAAGAGCCTCCTAAGCCTTTCTACAGTGATGTCTCTAGTGTTC
AATGTTGTTTCTACTTTAATGGCATAGCCCTAGTAAATAGTCAAACTAATCATTAAGTTT
ATTAAAAAAAACCTCTTAACCTCGTAACCCCTGTTATACTCAAATATACTCAAACACCGC
AGCTGAGAATATCCTAATTCATGAACCGTGATGAACTGTGACAATTCCACCAGGAATAAG
ATCAGCGTTTTAGGCGCTGCTGTTGAGAACGTAGGACGATATTTTATGGTTACCCTTATA
TGTTCTTTTATGTGCGTTTGAGTATATACATAAACGTATGTATATACAGGATTTTTTCAG
CCCGACTCACTCTTTGGCAATTGATCCAAATCAGTTGGATTTGGAAAC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               32-628, gnl|bosTau2|chr11 (80508470-80507856)
               

               
               32-628, gnl|Hg17|chr9 (129757155-129756531)
               

               
               32-628, gnl|Mm7|chr2 (31051886-31051063)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-628, gnl|bosTau2|chr11 (80508470-80507856)
               

               
               32-628, gnl|Hg17|chr9 (129757155-129756531)
               

               
               32-628, gnl|Mm7|chr2 (31051886-31051063)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               nmm (0.132802)

	32-628, gnl\|bosTau2\|chr11 (80508470-80507856)
	32-628, gnl\|Hg17\|chr9 (129757155-129756531)
	32-628, gnl\|Mm7\|chr2 (31051886-31051063)