Non-Coding RNA Search

Ss1.1-rplac_7317.5

Sequence:


               
               AAATGATGAAAAGTTCAAAGCACATGCTTCAATGTACTACCCCTACTTGTGTGAAATTAT
GCAGTTTGACCTGATTCCTGAGCTCCGAGCGGTTCTGCGGAAGTTCTTCCTGAGGATAGG
TGTTGTGTATAAGATCTGGATTCCAGAAGAGCCATCACAAGTACCAGGGACCCTGTCACC
GATCTGGTAGCGCTGGCCCCTGCGGGCCACGGCTGCAGCTCTGCAGAACTGTCACCCTGC
CACATCTGTCTGGCACACCCCGAGAAGGGTCAGACTATAGAAAGTCGGCATCTTGGAGCT
CAGGCTGGCCTGGATGAAAATGGTTCCATCCAAGTTCCTGACTGAGGCGTTGTGGTATTT
TGTTAAAGTGTTGCGTACCCAGTTATCACAGTGGGTGAGGAGTCCGTCTCATTTCTGTCA
TTCCATTTTACCAACTGAACTGTCAATTTCTGTCATTGCACACGCTGTCATTTTCAAGCA
AAGTCCCACGATTGGCCGTACGTAAATGTTCTGTCAGAGGAGGTCACTCTCCTTGAAAAT
ACTGAACTTAGCTGTGTAGGTTCGTGATTATTAGCAAGTATGTTAATAAAATCTCTTGTA
AGGGCTAAGTGCCACCTAAAATATGCTGGGTGTTTTTGTTATTTTGAATGTGCTGCAGAA
GTTTGAGTGTTTTTGTCAGTTGTGAGTCCGCTATAGTTATATTAGTTTGGGGAAAAGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGATGAAAAGTTCAAAGCACATGCTTCAATGTACTACCCCTACTTGTGTGAAATTAT
GCAGTTTGACCTGATTCCTGAGCTCCGAGCGGTTCTGCGGAAGTTCTTCCTGAGGATAGG
TGTTGTGTATAAGATCTGGATTCCAGAAGAGCCATCACAAGTACCAGGGACCCTGTCACC
GATCTGGTAGCGCTGGCCCCTGCGGGCCACGGCTGCAGCTCTGCAGAACTGTCACCCTGC
CACATCTGTCTGGCACACCCCGAGAAGGGTCAGACTATAGAAAGTCGGCATCTTGGAGCT
CAGGCTGGCCTGGATGAAAATGGTTCCATCCAAGTTCCTGACTGAGGCGTTGTGGTATTT
TGTTAAAGTGTTGCGTACCCAGTTATCACAGTGGGTGAGGAGTCCGTCTCATTTCTGTCA
TTCCATTTTACCAACTGAACTGTCAATTTCTGTCATTGCACACGCTGTCATTTTCAAGCA
AAGTCCCACGATTGGCCGTACGTAAATGTTCTGTCAGAGGAGGTCACTCTCCTTGAAAAT
ACTGAACTTAGCTGTGTAGGTTCGTGATTATTAGCAAGTATGTTAATAAAATCTCTTGTA
AGGGCTAAGTGCCACCTAAAATATGCTGGGTGTTTTTGTTATTTTGAATGTGCTGCAGAA
GTTTGAGTGTTTTTGTCAGTTGTGAGTCCGCTATAGTTATATTAGTTTGGGGAAAAGTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|88407|pir||A28938

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|88407|pir||A28938

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-719, gnl|bosTau2|chr13 (57437370-57438072)
               

               
               11-719, gnl|Hg17|chr20 (47082964-47083671)
               

               
               11-719, gnl|Mm7|chr2 (166635263-166635917)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-719, gnl|bosTau2|chr13 (57437370-57438072)
               

               
               11-719, gnl|Hg17|chr20 (47082964-47083671)
               

               
               11-719, gnl|Mm7|chr2 (166635263-166635917)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               rec (0.346141)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)

	11-719, gnl\|bosTau2\|chr13 (57437370-57438072)
	11-719, gnl\|Hg17\|chr20 (47082964-47083671)
	11-719, gnl\|Mm7\|chr2 (166635263-166635917)