Ss1.1-rplac_7463.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGCTTTGATTGAAATACCTAACAACTGTGTTGTGGCCGCAGTTGGCAAAGAACTGATA ATTTTCAGGTTGGTAGCACCCTCAGAGGGATCACTAGGATGGGATGTTCTTGAAGTTAAG CGTCTCCTTGATCACCAGGATAATATTCTCTCGCTGGTTAATGTCAATGATTTGAGTTTT GTAACTGGCTCCCATGTTGGAGAGCTGATCATCTGGGATATCCGGGACTGGACTGTGCAG GCCTGTGAACGCAACTTCTGGGATCCATCTCCACAGCTGGACGCTCAGCAAGAAATAAAA CTCTGTCAGAAACCCAATGACATTTCTATTCATCATTTTACCTGGGATGAAGAGAACATA TTTGTTGCAGTTGGAAGGGGTTTATATGTGTATAACCTTCAAATGAAGCGTGTGATTGCC TGTCAGAAAACTGCCCATGACTCCAATGTCCTGCATGTTGCCAAACTTCCAAACAGGCAG TTAATCTCATGCTCAGAAGATGGCAGTGTACGCATTTGGGAGTTACGAGAAAAACAGCAG CGTGCAGCTGAACCTGTACCAACAGGTTTTTTTAACATGTGGGGATTTGGAAGAGTAAAT AAACAAGCTTGCCACTCTGTTAAAAAGCAACAAGAAAATGCCACTTCATGTTCACTAGAA CTTATTGGAGATTTGATTGGACACTCATCATCTGTCGAGATGTTTCTGTACTTTGAAGAT CACGGACTAGTGACATGCTCTGCTGATCATCTCGTTATTTTGTGGAAAAATGGAGAACGT GAATCTGGGTTGCGCAGTTTAAAGTTATTTCAGAAATTAGAGGAGAATGGTGATTTATAT CATGCTGTCTAGTGTAAGGAATTTGGAATACCTGTGCGTGGATATTGAACATTAAATATA GGGTAATACTCTGAAAACCATTACCATGATGATAAATTTTGCAGTTTTTTTTCTTATTAC TCCATAAATTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGCTTTGATTGAAATACCTAACAACTGTGTTGTGGCCGCAGTTGGCAAAGAACTGATA ATTTTCAGGTTGGTAGCACCCTCAGAGGGATCACTAGGATGGGATGTTCTTGAAGTTAAG CGTCTCCTTGATCACCAGGATAATATTCTCTCGCTGGTTAATGTCAATGATTTGAGTTTT GTAACTGGCTCCCATGTTGGAGAGCTGATCATCTGGGATATCCGGGACTGGACTGTGCAG GCCTGTGAACGCAACTTCTGGGATCCATCTCCACAGCTGGACGCTCAGCAAGAAATAAAA CTCTGTCAGAAACCCAATGACATTTCTATTCATCATTTTACCTGGGATGAAGAGAACATA TTTGTTGCAGTTGGAAGGGGTTTATATGTGTATAACCTTCAAATGAAGCGTGTGATTGCC TGTCAGAAAACTGCCCATGACTCCAATGTCCTGCATGTTGCCAAACTTCCAAACAGGCAG TTAATCTCATGCTCAGAAGATGGCAGTGTACGCATTTGGGAGTTACGAGAAAAACAGCAG CGTGCAGCTGAACCTGTACCAACAGGTTTTTTTAACATGTGGGGATTTGGAAGAGTAAAT AAACAAGCTTGCCACTCTGTTAAAAAGCAACAAGAAAATGCCACTTCATGTTCACTAGAA CTTATTGGAGATTTGATTGGACACTCATCATCTGTCGAGATGTTTCTGTACTTTGAAGAT CACGGACTAGTGACATGCTCTGCTGATCATCTCGTTATTTTGTGGAAAAATGGAGAACGT GAATCTGGGTTGCGCAGTTTAAAGTTATTTCAGAAATTAGAGGAGAATGGTGATTTATAT CATGCTGTCTAGTGTAAGGAATTTGGAATACCTGTGCGTGGATATTGAACATTAAATATA GGGTAATACTCTGAAAACCATTACCATGATGATAAATTTTGCAGTTTTTTTTCTTATTAC TCCATAAATTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 169-354, gnl|bosTau2|chr10 (2481039-2480854) | |
| 169-354, gnl|canFam2|chr3 (32165748-32165546) | |
| 169-354, gnl|dasNov1|scaffold_5085 (54356-54557) | |
| 169-354, gnl|echTel1|scaffold_291740 (48452-48654) | |
| 169-354, gnl|galGal2|chr13_random (266425-266620) | |
| 169-354, gnl|hg17|chr5 (76772387-76772589) | |
| 169-354, gnl|Hg17|chr5 (76772579-76772394) | |
| 169-354, gnl|loxAfr1|scaffold_17007 (24929-24727) | |
| 169-354, gnl|mm7|chr13 (92078270-92078068) | |
| 169-354, gnl|Mm7|chr13 (92078076-92078261) | |
| 169-354, gnl|monDom2|scaffold_27 (39111824-39111622) | |
| 169-354, gnl|panTro1|chr4 (38631444-38631242) | |
| 169-354, gnl|rheMac2|chr6 (73676910-73677112) | |
| 169-354, gnl|rn3|chr2 (25261459-25261257) | |
| 169-354, gnl|tetNig1|chrUn_random (1610294-1610483) | |
| 169-354, gnl|xenTro1|scaffold_818 (263452-263237) | |
| 447-567, gnl|bosTau2|chr10 (2477079-2476957) | |
| 447-567, gnl|canFam2|chr3 (32171206-32171082) | |
| 447-567, gnl|dasNov1|scaffold_5085 (50118-50260) | |
| 447-567, gnl|echTel1|scaffold_291740 (43731-43874) | |
| 447-567, gnl|fr1|chrUn (221363987-221363882) | |
| 447-567, gnl|galGal2|chr13_random (263424-263546) | |
| 447-567, gnl|hg17|chr5 (76768892-76769035) | |
| 447-567, gnl|Hg17|chr5 (76769055-76768915) | |
| 447-567, gnl|loxAfr1|scaffold_17007 (30356-30214) | |
| 447-567, gnl|mm7|chr13 (92081279-92081130) | |
| 447-567, gnl|Mm7|chr13 (92081109-92081253) | |
| 447-567, gnl|monDom2|scaffold_27 (39116685-39116557) | |
| 447-567, gnl|panTro1|chr4 (38634942-38634799) | |
| 447-567, gnl|rheMac2|chr6 (73673417-73673558) | |
| 447-567, gnl|rn3|chr2 (25265314-25265177) | |
| 447-567, gnl|xenTro1|scaffold_818 (265486-265376) | |
| 698-959, gnl|bosTau2|chr10 (2472786-2472525) | |
| 698-959, gnl|Hg17|chr5 (76764870-76764578) | |
| 698-959, gnl|Mm7|chr13 (92084714-92084980) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 169-354, gnl|bosTau2|chr10 (2481039-2480854) | |
| 169-354, gnl|canFam2|chr3 (32165748-32165546) | |
| 169-354, gnl|dasNov1|scaffold_5085 (54356-54557) | |
| 169-354, gnl|echTel1|scaffold_291740 (48452-48654) | |
| 169-354, gnl|galGal2|chr13_random (266425-266620) | |
| 169-354, gnl|hg17|chr5 (76772387-76772589) | |
| 169-354, gnl|Hg17|chr5 (76772579-76772394) | |
| 169-354, gnl|loxAfr1|scaffold_17007 (24929-24727) | |
| 169-354, gnl|mm7|chr13 (92078270-92078068) | |
| 169-354, gnl|Mm7|chr13 (92078076-92078261) | |
| 169-354, gnl|monDom2|scaffold_27 (39111824-39111622) | |
| 169-354, gnl|panTro1|chr4 (38631444-38631242) | |
| 169-354, gnl|rheMac2|chr6 (73676910-73677112) | |
| 169-354, gnl|rn3|chr2 (25261459-25261257) | |
| 169-354, gnl|tetNig1|chrUn_random (1610294-1610483) | |
| 169-354, gnl|xenTro1|scaffold_818 (263452-263237) | |
| 447-567, gnl|bosTau2|chr10 (2477079-2476957) | |
| 447-567, gnl|canFam2|chr3 (32171206-32171082) | |
| 447-567, gnl|dasNov1|scaffold_5085 (50118-50260) | |
| 447-567, gnl|echTel1|scaffold_291740 (43731-43874) | |
| 447-567, gnl|fr1|chrUn (221363987-221363882) | |
| 447-567, gnl|galGal2|chr13_random (263424-263546) | |
| 447-567, gnl|hg17|chr5 (76768892-76769035) | |
| 447-567, gnl|Hg17|chr5 (76769055-76768915) | |
| 447-567, gnl|loxAfr1|scaffold_17007 (30356-30214) | |
| 447-567, gnl|mm7|chr13 (92081279-92081130) | |
| 447-567, gnl|Mm7|chr13 (92081109-92081253) | |
| 447-567, gnl|monDom2|scaffold_27 (39116685-39116557) | |
| 447-567, gnl|panTro1|chr4 (38634942-38634799) | |
| 447-567, gnl|rheMac2|chr6 (73673417-73673558) | |
| 447-567, gnl|rn3|chr2 (25265314-25265177) | |
| 447-567, gnl|xenTro1|scaffold_818 (265486-265376) | |
| 698-959, gnl|bosTau2|chr10 (2472786-2472525) | |
| 698-959, gnl|Hg17|chr5 (76764870-76764578) | |
| 698-959, gnl|Mm7|chr13 (92084714-92084980) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| col (0.195008) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pla (0.133672) | |
| sug (0.127291) | |
| ese (0.126502) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pla (0.133672) | |
| sug (0.127291) | |
| ese (0.126502) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) |