Non-Coding RNA Search

Ss1.1-rplac_7479.5

Sequence:


               
               GCGGCCGCCATGGGCGCGGACGAGGAGGGGGCCAAGCCCAAAGTGTCCCCTTCGCTTCTG
CCCTTCAGCGTGGAGGCGCTCATGGCCGATCACAGGAAGCCCGGGGCCAAGGACAGCGTC
CTGGCGGCCTCCGAAAGCGCGCAGGCGGCGGGCGGCTCGGCGCAGCCCCTGGGCGCCCGG
CCCGGGTCGTTGGGCGCCCCGGATGCGCCGTCCTCGCCGCGGCGGCTCGGCCATTTCTCG
GTGGGAGGACTCCTCAAGCTGCCAGAAGATGCGCTCGTCAAAGCCGAGAGTCCCGAGAAG
CCCGAGAGGACCCCGTGGATGCAGAACCCCCGCTTCTCCCCGCCCCCGGCCAGGCGGCTG
AGCCCCCCGGCCTGCACCCTGCGCAAGCACAAGACCAACCGCAAGCCGCGGACGCCCTTC
ACCACCGCGCAGCTGCTGGCGCTGGAGCGCAAGTTCCGCCAGAAGCAGTACCTGTCCATC
GCCGAGCGCGCCGAGTTCTCCAGCTCGCTCAGCCTCACGGAGACGCAGGTGAAGATCTGG
TTTCAGAACCGCCGGGCCAAGGCCAAGAGACTGCAGGAGGCCGAGCTGGAGAAGCTGAAG
ATGGCCGCTAAACCCATGCTGCCGCCCGCCGCCTTCGGCCTCTCCTTCCCACTCGGCGGC
CCCGCGGCCGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCCATGGGCGCGGACGAGGAGGGGGCCAAGCCCAAAGTGTCCCCTTCGCTTCTG
CCCTTCAGCGTGGAGGCGCTCATGGCCGATCACAGGAAGCCCGGGGCCAAGGACAGCGTC
CTGGCGGCCTCCGAAAGCGCGCAGGCGGCGGGCGGCTCGGCGCAGCCCCTGGGCGCCCGG
CCCGGGTCGTTGGGCGCCCCGGATGCGCCGTCCTCGCCGCGGCGGCTCGGCCATTTCTCG
GTGGGAGGACTCCTCAAGCTGCCAGAAGATGCGCTCGTCAAAGCCGAGAGTCCCGAGAAG
CCCGAGAGGACCCCGTGGATGCAGAACCCCCGCTTCTCCCCGCCCCCGGCCAGGCGGCTG
AGCCCCCCGGCCTGCACCCTGCGCAAGCACAAGACCAACCGCAAGCCGCGGACGCCCTTC
ACCACCGCGCAGCTGCTGGCGCTGGAGCGCAAGTTCCGCCAGAAGCAGTACCTGTCCATC
GCCGAGCGCGCCGAGTTCTCCAGCTCGCTCAGCCTCACGGAGACGCAGGTGAAGATCTGG
TTTCAGAACCGCCGGGCCAAGGCCAAGAGACTGCAGGAGGCCGAGCTGGAGAAGCTGAAG
ATGGCCGCTAAACCCATGCTGCCGCCCGCCGCCTTCGGCCTCTCCTTCCCACTCGGCGGC
CCCGCGGCCGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|184299|gb|AAA58665.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|184299|gb|AAA58665.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               428-547, + strand, RNAz p=0.553364

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               428-547, + strand, RNAz p=0.553364

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               350-657, gnl|bosTau2|chr26 (34926114-34926415)
               

               
               350-657, gnl|Hg17|chr4 (4982496-4982808)
               

               
               350-657, gnl|Mm7|chr7 (136461931-136461626)
               


               
               380-555, gnl|bosTau2|chr11 (83176205-83176377)
               

               
               380-555, gnl|Hg17|chr9 (132492321-132492493)
               

               
               380-555, gnl|Mm7|chr2 (28918824-28918652)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               350-657, gnl|bosTau2|chr26 (34926114-34926415)
               

               
               350-657, gnl|Hg17|chr4 (4982496-4982808)
               

               
               350-657, gnl|Mm7|chr7 (136461931-136461626)
               


               
               380-555, gnl|bosTau2|chr11 (83176205-83176377)
               

               
               380-555, gnl|Hg17|chr9 (132492321-132492493)
               

               
               380-555, gnl|Mm7|chr2 (28918824-28918652)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.401016)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               ebs (0.118301)

	350-657, gnl\|bosTau2\|chr26 (34926114-34926415)
	350-657, gnl\|Hg17\|chr4 (4982496-4982808)
	350-657, gnl\|Mm7\|chr7 (136461931-136461626)

	380-555, gnl\|bosTau2\|chr11 (83176205-83176377)
	380-555, gnl\|Hg17\|chr9 (132492321-132492493)
	380-555, gnl\|Mm7\|chr2 (28918824-28918652)