Ss1.1-rplac_7767.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTGGCTCGCACAGCGCAGACGGCGCAGGGAGCACACATCGCCAGTCTGTGCGCAGAGC CTGAGCCAGAAGCCGCGGGGACACCATGCACGCCCCCAACTGAAGCAACACCTCAAAGCC GAAGCTCCGGGCAGCCCGGAGGATTTCAGGGAGCTCAGACTCAGAGGAACTCCTGAGGAG AGACCCCTCGAAACCTCTCCAGGACAGTCCTCACCGGACTCTCTGCCACTGCAGACAGGA GCGCACAGTGGCCCCGGCTCGCCGCGCCATGGAGCGGATACCCAGCGCGCAGCCGCCCCC CGCTTGCCTGCCCAAAGCACCAGGACTGGAGCCTGGAGACCTACCAGGGATGGATTTTGC CCACATGTATCAAGTGTACAAGTCGAGGCGGGGAATAAAGCGGAGCGAGGACAGCAAGGA GACTTACAAACTGCCGCACCGGCTCATCGAGAAAAAGAGACGTGACCGGATTAACGAGTG CATCGCCCAGCTGAAGGATCTCCTCCCCGAACATCTCAAACTTACAACTTTGGGTCACTT GGAAAAAGCAGTGGTTCTTGAACTTACCTTGAAGCATGTGAAAGCACTAACGAACCTAAT TGATCAGCAACAACAGAAAATCATTGCCCTGCAGAGCGGTTTGCAAGCTGGTGATCTGTC GGGGAGAAATGTCGAAGCAGGTCAAGAGATGTTCTGCTCAGGTTTCCAGACCTGTGCCCG GGAGGTGCTTCAGTACTTGGCCAAGCATGAGAATACTCGGGACCTGAAATCTTCGCAGCT GGTTACCCACCTCCACCGCGTGGTCTCCGAGCTCCTGCAAGGTGGTACCTCCAGGAAGCC AGCAGACCCAGCTCCCAAAGTGATGGACTTCAAGGAGAAACCCAGCTCCCTGGCCAAAGG CTCTGAAGGCCCAGGCAAAAACTGTGTGCCAGTCATCCAGCGGACTTTCCCTCACTCAAG TGGTGAGCAGAGTGGCAGTGACACAGACACAGACAGTGGGTACGGAGGAGAATCAGAGAA GAGCGAGCTGCGGGTCGAGCAGCCATACTTCAAAAGTGATCATGGACGCAGGTTCACCAT GGGAGAAAGGATCAGTGCTATTAAGCAAGAATCCGAAGAACCCCCCACGAAAAAGAGCAG GATGCAACTCTCAGATGATGAAGGCCATTTCACTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTGGCTCGCACAGCGCAGACGGCGCAGGGAGCACACATCGCCAGTCTGTGCGCAGAGC CTGAGCCAGAAGCCGCGGGGACACCATGCACGCCCCCAACTGAAGCAACACCTCAAAGCC GAAGCTCCGGGCAGCCCGGAGGATTTCAGGGAGCTCAGACTCAGAGGAACTCCTGAGGAG AGACCCCTCGAAACCTCTCCAGGACAGTCCTCACCGGACTCTCTGCCACTGCAGACAGGA GCGCACAGTGGCCCCGGCTCGCCGCGCCATGGAGCGGATACCCAGCGCGCAGCCGCCCCC CGCTTGCCTGCCCAAAGCACCAGGACTGGAGCCTGGAGACCTACCAGGGATGGATTTTGC CCACATGTATCAAGTGTACAAGTCGAGGCGGGGAATAAAGCGGAGCGAGGACAGCAAGGA GACTTACAAACTGCCGCACCGGCTCATCGAGAAAAAGAGACGTGACCGGATTAACGAGTG CATCGCCCAGCTGAAGGATCTCCTCCCCGAACATCTCAAACTTACAACTTTGGGTCACTT GGAAAAAGCAGTGGTTCTTGAACTTACCTTGAAGCATGTGAAAGCACTAACGAACCTAAT TGATCAGCAACAACAGAAAATCATTGCCCTGCAGAGCGGTTTGCAAGCTGGTGATCTGTC GGGGAGAAATGTCGAAGCAGGTCAAGAGATGTTCTGCTCAGGTTTCCAGACCTGTGCCCG GGAGGTGCTTCAGTACTTGGCCAAGCATGAGAATACTCGGGACCTGAAATCTTCGCAGCT GGTTACCCACCTCCACCGCGTGGTCTCCGAGCTCCTGCAAGGTGGTACCTCCAGGAAGCC AGCAGACCCAGCTCCCAAAGTGATGGACTTCAAGGAGAAACCCAGCTCCCTGGCCAAAGG CTCTGAAGGCCCAGGCAAAAACTGTGTGCCAGTCATCCAGCGGACTTTCCCTCACTCAAG TGGTGAGCAGAGTGGCAGTGACACAGACACAGACAGTGGGTACGGAGGAGAATCAGAGAA GAGCGAGCTGCGGGTCGAGCAGCCATACTTCAAAAGTGATCATGGACGCAGGTTCACCAT GGGAGAAAGGATCAGTGCTATTAAGCAAGAATCCGAAGAACCCCCCACGAAAAAGAGCAG GATGCAACTCTCAGATGATGAAGGCCATTTCACTAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 650-768, - strand, RNAz p=0.706759 | |
| 849-968, - strand, RNAz p=0.6986 | |
| 1000-1176, - strand, RNAz p=0.995312 | |
| 1049-1168, - strand, RNAz p=0.64113 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 650-768, - strand, RNAz p=0.706759 | |
| 849-968, - strand, RNAz p=0.6986 | |
| 1000-1176, - strand, RNAz p=0.995312 | |
| 1049-1168, - strand, RNAz p=0.64113 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-349, gnl|bosTau2|chr22 (17172794-17173142) | |
| 1-349, gnl|Hg17|chr3 (4996126-4996484) | |
| 1-349, gnl|Mm7|chr6 (108754671-108755031) | |
| 417-526, gnl|bosTau2|chr22 (17173631-17173740) | |
| 417-526, gnl|canFam2|chr20 (15648815-15648684) | |
| 417-526, gnl|danRer3|chr17 (38807354-38807474) | |
| 417-526, gnl|dasNov1|scaffold_7645 (11149-11018) | |
| 417-526, gnl|echTel1|scaffold_295677 (53149-53051) | |
| 417-526, gnl|fr1|chrUn (163364663-163364547) | |
| 417-526, gnl|galGal2|chr12 (18513158-18513277) | |
| 417-526, gnl|hg17|chr3 (4996984-4997115) | |
| 417-526, gnl|Hg17|chr3 (4996984-4997093) | |
| 417-526, gnl|loxAfr1|scaffold_17953 (64414-64283) | |
| 417-526, gnl|mm7|chr6 (108755541-108755672) | |
| 417-526, gnl|Mm7|chr6 (108755541-108755650) | |
| 417-526, gnl|monDom2|scaffold_5 (30680848-30680979) | |
| 417-526, gnl|oryCun1|scaffold_197419 (6538-6669) | |
| 417-526, gnl|panTro1|chr2 (5116766-5116897) | |
| 417-526, gnl|rheMac2|chr2 (56053831-56053700) | |
| 417-526, gnl|rn3|chr4 (144385240-144385371) | |
| 417-526, gnl|tetNig1|chr11 (9475322-9475202) | |
| 417-526, gnl|xenTro1|scaffold_173 (1816754-1816885) | |
| 650-1176, gnl|bosTau2|chr22 (17176167-17176693) | |
| 650-1176, gnl|canFam2|chr20 (15646358-15645944) | |
| 650-1176, gnl|danRer3|chr17 (38808167-38808575) | |
| 650-1176, gnl|dasNov1|scaffold_219712 (524-111) | |
| 650-1176, gnl|echTel1|scaffold_295677 (50715-50303) | |
| 650-1176, gnl|fr1|chrUn (146474151-146474594) | |
| 650-1176, gnl|galGal2|chr12 (18514530-18514906) | |
| 650-1176, gnl|hg17|chr3 (4999495-4999909) | |
| 650-1176, gnl|Hg17|chr3 (4999520-5000046) | |
| 650-1176, gnl|loxAfr1|scaffold_17953 (61873-61459) | |
| 650-1176, gnl|mm7|chr6 (108758493-108758905) | |
| 650-1176, gnl|Mm7|chr6 (108758516-108759042) | |
| 650-1176, gnl|monDom2|scaffold_5 (30683933-30684344) | |
| 650-1176, gnl|oryCun1|scaffold_197419 (9122-9534) | |
| 650-1176, gnl|panTro1|chr2 (5119261-5119675) | |
| 650-1176, gnl|rheMac2|chr2 (56051402-56050988) | |
| 650-1176, gnl|rn3|chr4 (144388329-144388741) | |
| 650-1176, gnl|tetNig1|chr11 (9474473-9474071) | |
| 650-1176, gnl|xenTro1|scaffold_173 (1818242-1818588) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-349, gnl|bosTau2|chr22 (17172794-17173142) | |
| 1-349, gnl|Hg17|chr3 (4996126-4996484) | |
| 1-349, gnl|Mm7|chr6 (108754671-108755031) | |
| 417-526, gnl|bosTau2|chr22 (17173631-17173740) | |
| 417-526, gnl|canFam2|chr20 (15648815-15648684) | |
| 417-526, gnl|danRer3|chr17 (38807354-38807474) | |
| 417-526, gnl|dasNov1|scaffold_7645 (11149-11018) | |
| 417-526, gnl|echTel1|scaffold_295677 (53149-53051) | |
| 417-526, gnl|fr1|chrUn (163364663-163364547) | |
| 417-526, gnl|galGal2|chr12 (18513158-18513277) | |
| 417-526, gnl|hg17|chr3 (4996984-4997115) | |
| 417-526, gnl|Hg17|chr3 (4996984-4997093) | |
| 417-526, gnl|loxAfr1|scaffold_17953 (64414-64283) | |
| 417-526, gnl|mm7|chr6 (108755541-108755672) | |
| 417-526, gnl|Mm7|chr6 (108755541-108755650) | |
| 417-526, gnl|monDom2|scaffold_5 (30680848-30680979) | |
| 417-526, gnl|oryCun1|scaffold_197419 (6538-6669) | |
| 417-526, gnl|panTro1|chr2 (5116766-5116897) | |
| 417-526, gnl|rheMac2|chr2 (56053831-56053700) | |
| 417-526, gnl|rn3|chr4 (144385240-144385371) | |
| 417-526, gnl|tetNig1|chr11 (9475322-9475202) | |
| 417-526, gnl|xenTro1|scaffold_173 (1816754-1816885) | |
| 650-1176, gnl|bosTau2|chr22 (17176167-17176693) | |
| 650-1176, gnl|canFam2|chr20 (15646358-15645944) | |
| 650-1176, gnl|danRer3|chr17 (38808167-38808575) | |
| 650-1176, gnl|dasNov1|scaffold_219712 (524-111) | |
| 650-1176, gnl|echTel1|scaffold_295677 (50715-50303) | |
| 650-1176, gnl|fr1|chrUn (146474151-146474594) | |
| 650-1176, gnl|galGal2|chr12 (18514530-18514906) | |
| 650-1176, gnl|hg17|chr3 (4999495-4999909) | |
| 650-1176, gnl|Hg17|chr3 (4999520-5000046) | |
| 650-1176, gnl|loxAfr1|scaffold_17953 (61873-61459) | |
| 650-1176, gnl|mm7|chr6 (108758493-108758905) | |
| 650-1176, gnl|Mm7|chr6 (108758516-108759042) | |
| 650-1176, gnl|monDom2|scaffold_5 (30683933-30684344) | |
| 650-1176, gnl|oryCun1|scaffold_197419 (9122-9534) | |
| 650-1176, gnl|panTro1|chr2 (5119261-5119675) | |
| 650-1176, gnl|rheMac2|chr2 (56051402-56050988) | |
| 650-1176, gnl|rn3|chr4 (144388329-144388741) | |
| 650-1176, gnl|tetNig1|chr11 (9474473-9474071) | |
| 650-1176, gnl|xenTro1|scaffold_173 (1818242-1818588) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| eje (0.0988338) |