Non-Coding RNA Search

Ss1.1-rplac_7830.5

Sequence:


               
               CGGTATCAGCGCGACTACGAAGAGATAGCAAGCCAGCTGAGCCGCCTGGACGCTGTGCTG
CAGCGCATCCGCGTGGGCAGCGCCCTTGTGCAGAGGATGAAGCGCTATGCCTCGGACCAG
GAGGTGCTGGACATGCACAGCTTCCTGCGCCAGGCGCTCCACAGCCTGAGCCAGGAGGAG
CCCCAGAAGCTGAGAGCCGCCGTGCGCACCGATAGCTTCGACGAATTCAAGGTGCGCCTG
CAGGACCTCGTCTCTTGCATCACCCAGGGCACAGATGCAGCTGTATCCAGGAGAGCCAGC
CCGGAGGCCACCAGCACACCCAGAGACACTTCTGATGTTGACCTGCACCCCTGACCTGTG
ACTGGCCAGTTTTCATGCACAGACCTCCAGGGGACAGGAAGCTCGCTCATTCTTGAGACA
GCTACTCCCATCTCTGGACTGCTCTGACTTAGACTGGTGCTTCGCTAGGTGGAAATGCCA
TGGCATCCCTTTAACTTGCCATGTTGGGTGCTTGCCTGCATGGCTCCTCTCCGCCAGGAT
AAGCTGCTTCAGTTCCTTCCTAGACTGGGCCTTGGGTTTGCTCCCCATGCTGGTTGTTCA
GGTGTGCCTGCTTGTCAAGGATTGGGGCCCCAGACTGACTGGTCCTCCATGGAAAGCAGG
TCTTGTGGCTGTGGCAGTCATCCTTTCTGGCTTGGTCATGGCATGGCCTATAGGAGAGAG
AGATTGCTGTAGGATGGGGCAATCAGGAGAGGCTTTCTGGAGGAGGCAGAACTTAGGATC
TGAGAGTTAGTGTGGAGAGAGCATGGAGTCTCACCGCTTGCATAGAAGATGAAGCTAAGG
CACAGAGAGTGTGTATGACAACCCAAGGCCACACAGCAAGCTAGGGACAGGACTTGAAGC
CAGTTCCTAACTGCCTTGAGCATTCCCATTTAACACATATACAAAAGTTTAAAATGGACA
TTATTTTTGAATAGGCAATATAATCATGGTCAGAATTTTAAAAAGTGATCATGTCGCCTA
CTTTGTGTCCCCCATTTATCTAGTTTTTATGCCCATTTGACTAGACTTATTAATTTGTTA
CATATCCTACCAAAATTTCTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTATCAGCGCGACTACGAAGAGATAGCAAGCCAGCTGAGCCGCCTGGACGCTGTGCTG
CAGCGCATCCGCGTGGGCAGCGCCCTTGTGCAGAGGATGAAGCGCTATGCCTCGGACCAG
GAGGTGCTGGACATGCACAGCTTCCTGCGCCAGGCGCTCCACAGCCTGAGCCAGGAGGAG
CCCCAGAAGCTGAGAGCCGCCGTGCGCACCGATAGCTTCGACGAATTCAAGGTGCGCCTG
CAGGACCTCGTCTCTTGCATCACCCAGGGCACAGATGCAGCTGTATCCAGGAGAGCCAGC
CCGGAGGCCACCAGCACACCCAGAGACACTTCTGATGTTGACCTGCACCCCTGACCTGTG
ACTGGCCAGTTTTCATGCACAGACCTCCAGGGGACAGGAAGCTCGCTCATTCTTGAGACA
GCTACTCCCATCTCTGGACTGCTCTGACTTAGACTGGTGCTTCGCTAGGTGGAAATGCCA
TGGCATCCCTTTAACTTGCCATGTTGGGTGCTTGCCTGCATGGCTCCTCTCCGCCAGGAT
AAGCTGCTTCAGTTCCTTCCTAGACTGGGCCTTGGGTTTGCTCCCCATGCTGGTTGTTCA
GGTGTGCCTGCTTGTCAAGGATTGGGGCCCCAGACTGACTGGTCCTCCATGGAAAGCAGG
TCTTGTGGCTGTGGCAGTCATCCTTTCTGGCTTGGTCATGGCATGGCCTATAGGAGAGAG
AGATTGCTGTAGGATGGGGCAATCAGGAGAGGCTTTCTGGAGGAGGCAGAACTTAGGATC
TGAGAGTTAGTGTGGAGAGAGCATGGAGTCTCACCGCTTGCATAGAAGATGAAGCTAAGG
CACAGAGAGTGTGTATGACAACCCAAGGCCACACAGCAAGCTAGGGACAGGACTTGAAGC
CAGTTCCTAACTGCCTTGAGCATTCCCATTTAACACATATACAAAAGTTTAAAATGGACA
TTATTTTTGAATAGGCAATATAATCATGGTCAGAATTTTAAAAAGTGATCATGTCGCCTA
CTTTGTGTCCCCCATTTATCTAGTTTTTATGCCCATTTGACTAGACTTATTAATTTGTTA
CATATCCTACCAAAATTTCTTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q05835_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q05835_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.779751

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.779751

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-274, gnl|bosTau2|chr21 (24000883-24001156)
               

               
               1-274, gnl|Hg17|chr15 (72102529-72102802)
               

               
               1-274, gnl|Mm7|chr9 (58263082-58262809)
               


               
               345-811, gnl|bosTau2|chr21 (24003384-24003849)
               

               
               345-811, gnl|Hg17|chr15 (72104979-72105451)
               

               
               345-811, gnl|Mm7|chr9 (58261114-58260689)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-274, gnl|bosTau2|chr21 (24000883-24001156)
               

               
               1-274, gnl|Hg17|chr15 (72102529-72102802)
               

               
               1-274, gnl|Mm7|chr9 (58263082-58262809)
               


               
               345-811, gnl|bosTau2|chr21 (24003384-24003849)
               

               
               345-811, gnl|Hg17|chr15 (72104979-72105451)
               

               
               345-811, gnl|Mm7|chr9 (58261114-58260689)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nje (0.16592)
               

               
               pla (0.133672)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1-274, gnl\|bosTau2\|chr21 (24000883-24001156)
	1-274, gnl\|Hg17\|chr15 (72102529-72102802)
	1-274, gnl\|Mm7\|chr9 (58263082-58262809)

	345-811, gnl\|bosTau2\|chr21 (24003384-24003849)
	345-811, gnl\|Hg17\|chr15 (72104979-72105451)
	345-811, gnl\|Mm7\|chr9 (58261114-58260689)