Ss1.1-rplac_8006.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACGCGCAATATGCCCAGAGTGTTTCAAGCCAGCCAAAAACAAACAGTCAGTATTCACT AGAATGGCAGTAATGAAAGCTTTGAATAAGATAAAAGAAGAGGATTTCCGCAAGCAGTTT CCTTGTCCTCCAAACTCACCAAAGGCTGTATGCACTGTTCTTGAAATTGAATGTGCTCAT GGTGCTGTTTTTGTGGCTGGGAGATATAATAAATACTCCAGGAATCTACCACAAACTCCT TGGATAATTGATGGAGAAAGGAAGCTGGAGTCTTCTGTGGAAGAATTAATTTCAGACCAT CTTCTGACAGTGTTCAAAGCAGAGAGCTTTAATTTTTCATCCTCTGGAAGAGAAGATGTT GATGTGAGAACATTAGGAAATGGAAGGCCCTTTGCAATTGAGCTGGTGAATCCTCATAGA ATACATTTCACTTCACAAGAAATTAAGGAACTTCAGCAGAGAATTAATAACTCATCTAAC AAAATTCAAGTTCGTGACTTGCAGCTTGTCACAAGAGAAGCAATAGGACACATGAAAGAA GGTGAAGAAGAAAAGACCAAGACCTACAGTGCCTTAATATGGACAAATAAAGCAATACAG AGGAAGGACATTGAATTCCTAGATGACATAAAGGACTTAAAGATCGACCAGAAGACACCT TTACGAGTCCTTCACCGGCGGCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACGCGCAATATGCCCAGAGTGTTTCAAGCCAGCCAAAAACAAACAGTCAGTATTCACT AGAATGGCAGTAATGAAAGCTTTGAATAAGATAAAAGAAGAGGATTTCCGCAAGCAGTTT CCTTGTCCTCCAAACTCACCAAAGGCTGTATGCACTGTTCTTGAAATTGAATGTGCTCAT GGTGCTGTTTTTGTGGCTGGGAGATATAATAAATACTCCAGGAATCTACCACAAACTCCT TGGATAATTGATGGAGAAAGGAAGCTGGAGTCTTCTGTGGAAGAATTAATTTCAGACCAT CTTCTGACAGTGTTCAAAGCAGAGAGCTTTAATTTTTCATCCTCTGGAAGAGAAGATGTT GATGTGAGAACATTAGGAAATGGAAGGCCCTTTGCAATTGAGCTGGTGAATCCTCATAGA ATACATTTCACTTCACAAGAAATTAAGGAACTTCAGCAGAGAATTAATAACTCATCTAAC AAAATTCAAGTTCGTGACTTGCAGCTTGTCACAAGAGAAGCAATAGGACACATGAAAGAA GGTGAAGAAGAAAAGACCAAGACCTACAGTGCCTTAATATGGACAAATAAAGCAATACAG AGGAAGGACATTGAATTCCTAGATGACATAAAGGACTTAAAGATCGACCAGAAGACACCT TTACGAGTCCTTCACCGGCGGCCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 209-326, + strand, RNAz p=0.840877 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 209-326, + strand, RNAz p=0.840877 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 188-326, gnl|bosTau2|chr11 (30042364-30042226) | |
| 188-326, gnl|canFam2|chr10 (64202319-64202490) | |
| 188-326, gnl|danRer3|chrNA (50525105-50524954) | |
| 188-326, gnl|dasNov1|scaffold_280435 (1240-1059) | |
| 188-326, gnl|echTel1|scaffold_309695 (89290-89143) | |
| 188-326, gnl|fr1|chrUn (185714047-185713877) | |
| 188-326, gnl|galGal2|chr3 (356167-356013) | |
| 188-326, gnl|hg17|chr2 (61099146-61099329) | |
| 188-326, gnl|Hg17|chr2 (61099315-61099177) | |
| 188-326, gnl|loxAfr1|scaffold_32720 (16923-16760) | |
| 188-326, gnl|mm7|chr11 (23664355-23664184) | |
| 188-326, gnl|Mm7|chr11 (23664194-23664332) | |
| 188-326, gnl|monDom2|scaffold_1 (25751870-25752037) | |
| 188-326, gnl|oryCun1|scaffold_213849 (47543-47373) | |
| 188-326, gnl|panTro1|chr12 (63321005-63321186) | |
| 188-326, gnl|rheMac2|chr13 (61126923-61127105) | |
| 188-326, gnl|rn3|chr14 (104629428-104629266) | |
| 188-326, gnl|tetNig1|chrUn_random (30563872-30563738) | |
| 188-326, gnl|xenTro1|scaffold_562 (289026-289195) | |
| 514-638, gnl|bosTau2|chr11 (30036062-30035937) | |
| 514-638, gnl|canFam2|chr10 (64194069-64194235) | |
| 514-638, gnl|danRer3|chrNA (50527839-50527693) | |
| 514-638, gnl|dasNov1|scaffold_10466 (56391-56536) | |
| 514-638, gnl|echTel1|scaffold_309695 (99615-99466) | |
| 514-638, gnl|fr1|chrUn (185714632-185714506) | |
| 514-638, gnl|galGal2|chr3 (361525-361387) | |
| 514-638, gnl|hg17|chr2 (61091777-61091926) | |
| 514-638, gnl|Hg17|chr2 (61091902-61091776) | |
| 514-638, gnl|mm7|chr11 (23672231-23672087) | |
| 514-638, gnl|Mm7|chr11 (23672108-23672237) | |
| 514-638, gnl|monDom2|scaffold_1 (25748249-25748398) | |
| 514-638, gnl|panTro1|chr12 (63313631-63313780) | |
| 514-638, gnl|rheMac2|chr13 (61117453-61117602) | |
| 514-638, gnl|rn3|chr14 (104641758-104641613) | |
| 514-638, gnl|tetNig1|chrUn_random (30564463-30564342) | |
| 514-638, gnl|xenTro1|scaffold_562 (283666-283813) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 188-326, gnl|bosTau2|chr11 (30042364-30042226) | |
| 188-326, gnl|canFam2|chr10 (64202319-64202490) | |
| 188-326, gnl|danRer3|chrNA (50525105-50524954) | |
| 188-326, gnl|dasNov1|scaffold_280435 (1240-1059) | |
| 188-326, gnl|echTel1|scaffold_309695 (89290-89143) | |
| 188-326, gnl|fr1|chrUn (185714047-185713877) | |
| 188-326, gnl|galGal2|chr3 (356167-356013) | |
| 188-326, gnl|hg17|chr2 (61099146-61099329) | |
| 188-326, gnl|Hg17|chr2 (61099315-61099177) | |
| 188-326, gnl|loxAfr1|scaffold_32720 (16923-16760) | |
| 188-326, gnl|mm7|chr11 (23664355-23664184) | |
| 188-326, gnl|Mm7|chr11 (23664194-23664332) | |
| 188-326, gnl|monDom2|scaffold_1 (25751870-25752037) | |
| 188-326, gnl|oryCun1|scaffold_213849 (47543-47373) | |
| 188-326, gnl|panTro1|chr12 (63321005-63321186) | |
| 188-326, gnl|rheMac2|chr13 (61126923-61127105) | |
| 188-326, gnl|rn3|chr14 (104629428-104629266) | |
| 188-326, gnl|tetNig1|chrUn_random (30563872-30563738) | |
| 188-326, gnl|xenTro1|scaffold_562 (289026-289195) | |
| 514-638, gnl|bosTau2|chr11 (30036062-30035937) | |
| 514-638, gnl|canFam2|chr10 (64194069-64194235) | |
| 514-638, gnl|danRer3|chrNA (50527839-50527693) | |
| 514-638, gnl|dasNov1|scaffold_10466 (56391-56536) | |
| 514-638, gnl|echTel1|scaffold_309695 (99615-99466) | |
| 514-638, gnl|fr1|chrUn (185714632-185714506) | |
| 514-638, gnl|galGal2|chr3 (361525-361387) | |
| 514-638, gnl|hg17|chr2 (61091777-61091926) | |
| 514-638, gnl|Hg17|chr2 (61091902-61091776) | |
| 514-638, gnl|mm7|chr11 (23672231-23672087) | |
| 514-638, gnl|Mm7|chr11 (23672108-23672237) | |
| 514-638, gnl|monDom2|scaffold_1 (25748249-25748398) | |
| 514-638, gnl|panTro1|chr12 (63313631-63313780) | |
| 514-638, gnl|rheMac2|chr13 (61117453-61117602) | |
| 514-638, gnl|rn3|chr14 (104641758-104641613) | |
| 514-638, gnl|tetNig1|chrUn_random (30564463-30564342) | |
| 514-638, gnl|xenTro1|scaffold_562 (283666-283813) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| cty (0.10408) |