Non-Coding RNA Search

Ss1.1-rplac_8043.5

Sequence:


               
               CTCGAGGAAGTGCCTTCTCAGAAGGGGACAGGATTGGGACGAGGCTCCTGGCGGTGGCTC
GGGCCTTCACCAGCTGCTTGACCTGGGCCAGGCTCCCTTCCCTCTCTGGGCCTCGGTTTC
CTGACCTGTACCCAGAGCTGCAGAAGCGCTGCCCCAGCTGTGCCTGAGGCCTCAGGCGCC
TTGACCTCTACTCGCGGCTGTTGGGAACTTGAGGCGCTCTCTTTGCTCCATCCCCAAGGC
TGAGACGAATTAGGACGGGTCCTCTCACGTCTCCTTCTTCCCTCCCAGGCCATCCGAGCC
ATTAACCCCTGCAGCGACTCGACCATGACCGCGGAGGAGTTCACTGATACCGTGTTCTCC
AAGATTGACGTCAATGGCGATGGGGAACTCTCCCTGGAGGAGTTCATGGAGGGCGTCCAG
AAGGACCAGATGCTCTTGGACACGCTAACGCGAAGCCTCGACCTCACCCGCATTGTGCGC
AGGCTCCAGAACGGAGAGCAGGATGAGGAGGGGGCTGGCGGTGGGGAGTCTGAGGCAGCG
GAGGCAGCCGGCTGAGCCCACCGCCCTGTGGCTTCTGTTTTGGGGAGGGGATGTGTGGTG
GTGCCTGGTGTCGCATTGTTTTAATACTAGGTAGGTAGAGTTTACTGAACTCCAAGGCTC
AGCTCACCTCTTCCCGGCTCACAGTAGCAGCAGAGCGGCAGGGACCGGAGCCTAGAGCTG
GGGAAAGTGACAGATGGTTCTGGAACCTTCTGTGTGACTCAGGTGGAGGTGATTGCTCCC
TGCTGGGGGCAACCTTCAACATCTGGCCCCTTCTGGCACTTCCTCCGGCTTTACCACCTC
CTCCACTGAGCTTCTCAGTTCCACACACTTCCAGGTAGAGAAGCTCTGATGTGGAGGTGG
GTTTTCCCTGGACTCAAATGGACTCCTACAGATCTGGTGGCTGCAGCCTCCATCTGGGCG
CTGTGTCACACGCCCATCCTGCCCCCAGGATGTGTGTGGTCTGTGTTGATTGGTTCCCCT
TTCAGCAAGCATAGATCGAATACCTACTTTATTAACGCTAGATGTTAGAGGTGCAAAGAG
GACAGTTCTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGAGGAAGTGCCTTCTCAGAAGGGGACAGGATTGGGACGAGGCTCCTGGCGGTGGCTC
GGGCCTTCACCAGCTGCTTGACCTGGGCCAGGCTCCCTTCCCTCTCTGGGCCTCGGTTTC
CTGACCTGTACCCAGAGCTGCAGAAGCGCTGCCCCAGCTGTGCCTGAGGCCTCAGGCGCC
TTGACCTCTACTCGCGGCTGTTGGGAACTTGAGGCGCTCTCTTTGCTCCATCCCCAAGGC
TGAGACGAATTAGGACGGGTCCTCTCACGTCTCCTTCTTCCCTCCCAGGCCATCCGAGCC
ATTAACCCCTGCAGCGACTCGACCATGACCGCGGAGGAGTTCACTGATACCGTGTTCTCC
AAGATTGACGTCAATGGCGATGGGGAACTCTCCCTGGAGGAGTTCATGGAGGGCGTCCAG
AAGGACCAGATGCTCTTGGACACGCTAACGCGAAGCCTCGACCTCACCCGCATTGTGCGC
AGGCTCCAGAACGGAGAGCAGGATGAGGAGGGGGCTGGCGGTGGGGAGTCTGAGGCAGCG
GAGGCAGCCGGCTGAGCCCACCGCCCTGTGGCTTCTGTTTTGGGGAGGGGATGTGTGGTG
GTGCCTGGTGTCGCATTGTTTTAATACTAGGTAGGTAGAGTTTACTGAACTCCAAGGCTC
AGCTCACCTCTTCCCGGCTCACAGTAGCAGCAGAGCGGCAGGGACCGGAGCCTAGAGCTG
GGGAAAGTGACAGATGGTTCTGGAACCTTCTGTGTGACTCAGGTGGAGGTGATTGCTCCC
TGCTGGGGGCAACCTTCAACATCTGGCCCCTTCTGGCACTTCCTCCGGCTTTACCACCTC
CTCCACTGAGCTTCTCAGTTCCACACACTTCCAGGTAGAGAAGCTCTGATGTGGAGGTGG
GTTTTCCCTGGACTCAAATGGACTCCTACAGATCTGGTGGCTGCAGCCTCCATCTGGGCG
CTGTGTCACACGCCCATCCTGCCCCCAGGATGTGTGTGGTCTGTGTTGATTGGTTCCCCT
TTCAGCAAGCATAGATCGAATACCTACTTTATTAACGCTAGATGTTAGAGGTGCAAAGAG
GACAGTTCTCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               93-199, - strand, RNAz p=0.696209

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-199, - strand, RNAz p=0.696209

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               17-397, gnl|bosTau2|chr23 (13328110-13327729)
               

               
               17-397, gnl|Hg17|chr6 (42254226-42254629)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-397, gnl|bosTau2|chr23 (13328110-13327729)
               

               
               17-397, gnl|Hg17|chr6 (42254226-42254629)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               pla (0.133672)

	17-397, gnl\|bosTau2\|chr23 (13328110-13327729)
	17-397, gnl\|Hg17\|chr6 (42254226-42254629)