Non-Coding RNA Search

Ss1.1-rplac_8131.5

Sequence:


               
               GCTCCACACTCCTTTGCATTGAAGGGTGAACGCAAGGTTGGAAAGATGACTAAGCTGGAA
GACCATCTGGAGGGGATCATCAACATCTTCCACCAGTACTCAGTTCGGTTGGGGCATTAT
GACACCCTTATCAAGCGGGAGCTGAAGCAGCTGATCACCAAGGAACTGCCCAACACCCTC
AAGGTAGGTTGCCCCTCTCCTGGCCGACGTGTCCACCCCCTGCGCTGAGGGCAGCGGCAA
GCCCCCGAGGACGATGGGGGGACCAGGATGGGGATGGGCTCGCCTCAGTGGGAGCTGGCA
AGGATGCTCTTCACCTGCTGTGGGACAGGGGCTCTGTATCTCTCCCAGTAGCCCCTCCAG
CCCCTTGGGCTCTGCTCCTTCCTCTCCCAGAGCTGAGGGAGGAGGGGCAGGGCGGGGCCG
GGTGAGGGGCACGATGCCTTCCCGCCTAAGACTTGATTCTAGGTTGGCTCCTGACAGCTG
CTTCTTTCCGCCTTTGGTTTTCTCACACTGGATTCTCCCACATAGTTTTGGTGAATGCGT
TACTGATCCTGAGCCTCCCTGAGTGGAGTCCTGAGGGATGGGGGCCGGGGGCTGGAGAAA
GAGGGCGCTCACTGGCTTCCCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCACACTCCTTTGCATTGAAGGGTGAACGCAAGGTTGGAAAGATGACTAAGCTGGAA
GACCATCTGGAGGGGATCATCAACATCTTCCACCAGTACTCAGTTCGGTTGGGGCATTAT
GACACCCTTATCAAGCGGGAGCTGAAGCAGCTGATCACCAAGGAACTGCCCAACACCCTC
AAGGTAGGTTGCCCCTCTCCTGGCCGACGTGTCCACCCCCTGCGCTGAGGGCAGCGGCAA
GCCCCCGAGGACGATGGGGGGACCAGGATGGGGATGGGCTCGCCTCAGTGGGAGCTGGCA
AGGATGCTCTTCACCTGCTGTGGGACAGGGGCTCTGTATCTCTCCCAGTAGCCCCTCCAG
CCCCTTGGGCTCTGCTCCTTCCTCTCCCAGAGCTGAGGGAGGAGGGGCAGGGCGGGGCCG
GGTGAGGGGCACGATGCCTTCCCGCCTAAGACTTGATTCTAGGTTGGCTCCTGACAGCTG
CTTCTTTCCGCCTTTGGTTTTCTCACACTGGATTCTCCCACATAGTTTTGGTGAATGCGT
TACTGATCCTGAGCCTCCCTGAGTGGAGTCCTGAGGGATGGGGGCCGGGGGCTGGAGAAA
GAGGGCGCTCACTGGCTTCCCCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1042186|gb|AAB34940.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1042186|gb|AAB34940.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               117-233, - strand, RNAz p=0.874434
               

               
               342-441, + strand, RNAz p=0.989344

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-233, - strand, RNAz p=0.874434
               

               
               342-441, + strand, RNAz p=0.989344

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-614, gnl|bosTau2|chr3 (2403334-2403953)
               

               
               1-614, gnl|Hg17|chr1 (150160190-150159540)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-614, gnl|bosTau2|chr3 (2403334-2403953)
               

               
               1-614, gnl|Hg17|chr1 (150160190-150159540)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               pla (0.133672)

	117-233, - strand, RNAz p=0.874434
	342-441, + strand, RNAz p=0.989344

	1-614, gnl\|bosTau2\|chr3 (2403334-2403953)
	1-614, gnl\|Hg17\|chr1 (150160190-150159540)