Non-Coding RNA Search

Ss1.1-rplac_8221.5

Sequence:


               
               CAGCTACAGCAAAGGCGGGGAGCTTCTGGAATGTGGGAGGATATTTGGAACTGGCGTTAT
GTCTTCTACCTCACCGACAGGGTTCTCTGAACCTCAGGACAGATGCCGCCGGCCCCCATG
TCACCACCTGGCGACAGAGCCCTGCCTGCTCCTCCCCATCCATGACGAGAGGGAAGGCAC
AGACCCTCTGGCTCCAGGGCCAGCTCTGTGTCCCTCTGGTCCCGCCGCTGTGCTGCAGAT
GGCAGGTGGGGGCCAAACCACGATCCATTCCAAACAATACCAGCGCCAGACAGACTCACC
CTCTCTGTCAGCCACGCCTTTCGAGAGAGAAATGATGTTTATTCCTAAAAAAATCAGACG
ACAACTTCCACCTGGTTAGGTATGTGTCTTAAAAAGAAACTGGTGTGTGGGTGGGGGTGG
AGCAGCTGGACCTGCCAGGACCCACGGGAGACCGTGGCCTTGGAGCTGGACCTGGGCTGC
AGGCACAGGGCAGCCTCGGGGGAGGGCCCCAGTCTGGCCTTCCTCTAAGCCATTTTGTAT
GGTGGTGTAAGAACACGGAATCTATTCTTTTCTGTTTGGGAAGTTTGACAAATGTCAAGG
AATTCAAAGGCAGATGTTAGTTCCTGAAGTTTCCGTTTGCGGTTTTGGCCTTGCTTCTGT
TCGAATCTTATAATTAAATACAGCTTTTGATATTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTACAGCAAAGGCGGGGAGCTTCTGGAATGTGGGAGGATATTTGGAACTGGCGTTAT
GTCTTCTACCTCACCGACAGGGTTCTCTGAACCTCAGGACAGATGCCGCCGGCCCCCATG
TCACCACCTGGCGACAGAGCCCTGCCTGCTCCTCCCCATCCATGACGAGAGGGAAGGCAC
AGACCCTCTGGCTCCAGGGCCAGCTCTGTGTCCCTCTGGTCCCGCCGCTGTGCTGCAGAT
GGCAGGTGGGGGCCAAACCACGATCCATTCCAAACAATACCAGCGCCAGACAGACTCACC
CTCTCTGTCAGCCACGCCTTTCGAGAGAGAAATGATGTTTATTCCTAAAAAAATCAGACG
ACAACTTCCACCTGGTTAGGTATGTGTCTTAAAAAGAAACTGGTGTGTGGGTGGGGGTGG
AGCAGCTGGACCTGCCAGGACCCACGGGAGACCGTGGCCTTGGAGCTGGACCTGGGCTGC
AGGCACAGGGCAGCCTCGGGGGAGGGCCCCAGTCTGGCCTTCCTCTAAGCCATTTTGTAT
GGTGGTGTAAGAACACGGAATCTATTCTTTTCTGTTTGGGAAGTTTGACAAATGTCAAGG
AATTCAAAGGCAGATGTTAGTTCCTGAAGTTTCCGTTTGCGGTTTTGGCCTTGCTTCTGT
TCGAATCTTATAATTAAATACAGCTTTTGATATTTAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               517-696, gnl|bosTau2|chr7 (18004314-18004122)
               

               
               517-696, gnl|canFam2|chr20 (59854831-59854631)
               

               
               517-696, gnl|hg17|chr19 (2305611-2305828)
               

               
               517-696, gnl|Hg17|chr19 (2305628-2305802)
               

               
               517-696, gnl|monDom2|scaffold_75 (4600203-4600404)
               

               
               517-696, gnl|panTro1|chr20_random (8376849-8376632)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               517-696, gnl|bosTau2|chr7 (18004314-18004122)
               

               
               517-696, gnl|canFam2|chr20 (59854831-59854631)
               

               
               517-696, gnl|hg17|chr19 (2305611-2305828)
               

               
               517-696, gnl|Hg17|chr19 (2305628-2305802)
               

               
               517-696, gnl|monDom2|scaffold_75 (4600203-4600404)
               

               
               517-696, gnl|panTro1|chr20_random (8376849-8376632)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               pla (0.133672)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               pla (0.133672)
               

               
               jca (0.11396)

	517-696, gnl\|bosTau2\|chr7 (18004314-18004122)
	517-696, gnl\|canFam2\|chr20 (59854831-59854631)
	517-696, gnl\|hg17\|chr19 (2305611-2305828)
	517-696, gnl\|Hg17\|chr19 (2305628-2305802)
	517-696, gnl\|monDom2\|scaffold_75 (4600203-4600404)
	517-696, gnl\|panTro1\|chr20_random (8376849-8376632)