Non-Coding RNA Search

Ss1.1-rplac_8284.5

Sequence:


               
               GGGGAGTCTGGCACAGCAGAGGATATTACAGACAATGTCCCCTCTGGCTGTCTCTAGGCG
GGTCGGTGGGACCCGGAGCTCTGCTGTCTGTGCTTTTTCTCTCAAGGACATCAAGCGTGT
CTTTGAGGGAAAGTACAAGGAATTGAACAAAGAGACTTCACGCTGGACTACCTACGGGTT
CCCTGATATTAGTCCCCGGCCAGGCAGCGTGAGTACTACCCCCCAACCCACTGAATGAAG
CCCCTCCTCCCAGGCACGTAACATGCATGTCAAAACACCTGTCAAGGCATAGTACAAATG
CCCAGCAAATGTGAGTGCTCCCCACACTCCCAAGTCCTGTCTGCTCAAATATATACCCAT
TCCAGCTGTCCAACCTCACCCTAAACACAGAGGAGTACCCTCTTCACCCCAGCTAAGTGC
ATGCCACATACCTGGGCATATCACTAAGGAAACAAAGGAGCACAGGCTAACACCAAGGAC
TGTCTTGGGCATCGTCACCTGCATTTCTTATTTCATTTTTGTTTTGTTTTTTGATCAAAN
NCATATATGTACAACATTTAAAGAGTCATATAAAACTGCATGGCTGATTACAAAAAACAG
CCCTATTCCCTA------------------------------------NCAATTCTTTTA
GCTGATTCAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAGTCTGGCACAGCAGAGGATATTACAGACAATGTCCCCTCTGGCTGTCTCTAGGCG
GGTCGGTGGGACCCGGAGCTCTGCTGTCTGTGCTTTTTCTCTCAAGGACATCAAGCGTGT
CTTTGAGGGAAAGTACAAGGAATTGAACAAAGAGACTTCACGCTGGACTACCTACGGGTT
CCCTGATATTAGTCCCCGGCCAGGCAGCGTGAGTACTACCCCCCAACCCACTGAATGAAG
CCCCTCCTCCCAGGCACGTAACATGCATGTCAAAACACCTGTCAAGGCATAGTACAAATG
CCCAGCAAATGTGAGTGCTCCCCACACTCCCAAGTCCTGTCTGCTCAAATATATACCCAT
TCCAGCTGTCCAACCTCACCCTAAACACAGAGGAGTACCCTCTTCACCCCAGCTAAGTGC
ATGCCACATACCTGGGCATATCACTAAGGAAACAAAGGAGCACAGGCTAACACCAAGGAC
TGTCTTGGGCATCGTCACCTGCATTTCTTATTTCATTTTTGTTTTGTTTTTTGATCAAAN
NCATATATGTACAACATTTAAAGAGTCATATAAAACTGCATGGCTGATTACAAAAAACAG
CCCTATTCCCTA------------------------------------NCAATTCTTTTA
GCTGATTCAATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               15-169, - strand, RNAz p=0.99619
               

               
               210-328, + strand, RNAz p=0.864556

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               15-169, - strand, RNAz p=0.99619
               

               
               210-328, + strand, RNAz p=0.864556

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               60-179, + strand, RNAmicro p=0.999975

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               60-179, + strand, RNAmicro p=0.999975

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               15-372, gnl|bosTau2|chr3 (10466213-10465862)
               

               
               15-372, gnl|Hg17|chr1 (152945768-152946110)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-372, gnl|bosTau2|chr3 (10466213-10465862)
               

               
               15-372, gnl|Hg17|chr1 (152945768-152946110)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	15-169, - strand, RNAz p=0.99619
	210-328, + strand, RNAz p=0.864556

	15-372, gnl\|bosTau2\|chr3 (10466213-10465862)
	15-372, gnl\|Hg17\|chr1 (152945768-152946110)