Non-Coding RNA Search

Ss1.1-rplac_8427.5

Sequence:


               
               GCCCGACGTTCCCCGAGGAGCTGGGGGAGACCCAGTCTGAGTACTCGGATTCCAGCTGTG
AGAATGGGGCCTTCTTCTGCAATGAGTGTGACTGCCGCTTCTCTGAGGAGGCCTCACTCA
AGAGGCACACGCTGCAGACCCACAGTGACAAACCCTACAAGTGTGACCGCTGCCAGGCCT
CCTTCCGCTACAAGGGCAACCTTGCCAGCCACAAGACCGTCCACACAGGTGAGAAACCCT
ATCGTTGTAACATCTGTGGGGCCCAGTTTAACCGGCCGGCAAACCTGAAAACCCACACCC
GAATTCACTCTGGAGAGAAGCCCTACAAATGCGAAACTTGCGGAGCCAGATTTGTACAGG
TGGCCCATCTGCGTGCCCACGTGCTCATCCACACTGGCGAGAAGCCCTATCCCTGTGAAA
TCTGTGGCACCCGTTTCCGGCACCTTCAGACTCTGAAGAGCCACCTGCGAATCCACACGG
GAGAGAAACCTTACCATTGCGAGAAGTGTAACCTGCATTTCCGTCACAAAAGCCAGCTTC
GTCTTCACTTGCGCCAGAAACACGGCGCCATCACCAACACCAAGGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGACGTTCCCCGAGGAGCTGGGGGAGACCCAGTCTGAGTACTCGGATTCCAGCTGTG
AGAATGGGGCCTTCTTCTGCAATGAGTGTGACTGCCGCTTCTCTGAGGAGGCCTCACTCA
AGAGGCACACGCTGCAGACCCACAGTGACAAACCCTACAAGTGTGACCGCTGCCAGGCCT
CCTTCCGCTACAAGGGCAACCTTGCCAGCCACAAGACCGTCCACACAGGTGAGAAACCCT
ATCGTTGTAACATCTGTGGGGCCCAGTTTAACCGGCCGGCAAACCTGAAAACCCACACCC
GAATTCACTCTGGAGAGAAGCCCTACAAATGCGAAACTTGCGGAGCCAGATTTGTACAGG
TGGCCCATCTGCGTGCCCACGTGCTCATCCACACTGGCGAGAAGCCCTATCCCTGTGAAA
TCTGTGGCACCCGTTTCCGGCACCTTCAGACTCTGAAGAGCCACCTGCGAATCCACACGG
GAGAGAAACCTTACCATTGCGAGAAGTGTAACCTGCATTTCCGTCACAAAAGCCAGCTTC
GTCTTCACTTGCGCCAGAAACACGGCGCCATCACCAACACCAAGGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26328463|dbj|BAC27970.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26328463|dbj|BAC27970.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               136-509, gnl|bosTau2|chr14 (25860096-25860472)
               

               
               136-509, gnl|Hg17|chr19 (49353352-49353728)
               

               
               136-509, gnl|Mm7|chr7 (21078817-21075292)
               


               
               145-503, gnl|bosTau2|chr14 (25895366-25895724)
               

               
               145-503, gnl|Hg17|chr19 (49431802-49432160)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-509, gnl|bosTau2|chr14 (25860096-25860472)
               

               
               136-509, gnl|Hg17|chr19 (49353352-49353728)
               

               
               136-509, gnl|Mm7|chr7 (21078817-21075292)
               


               
               145-503, gnl|bosTau2|chr14 (25895366-25895724)
               

               
               145-503, gnl|Hg17|chr19 (49431802-49432160)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               fty (0.17584)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               fty (0.17584)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

	136-509, gnl\|bosTau2\|chr14 (25860096-25860472)
	136-509, gnl\|Hg17\|chr19 (49353352-49353728)
	136-509, gnl\|Mm7\|chr7 (21078817-21075292)

	145-503, gnl\|bosTau2\|chr14 (25895366-25895724)
	145-503, gnl\|Hg17\|chr19 (49431802-49432160)

	cte (0.29274)
	fty (0.17584)
	spl (0.143184)
	pla (0.133672)
	tra (0.123092)