Non-Coding RNA Search

Ss1.1-rplac_8437.5

Sequence:


               
               CCGAAGAGCCGCGGCTGCGGAGGCGGAGCAGGCGGAGGCGCGAGACCCACGCCCTCGGCG
ATCGCCGGCTGTGCCAGCGCTGCCTCCCGCTCGCGCGGGCCTTCAGGTCACCCCGGCCCG
AGAGCCCGGAGCCGAGATGGAAACGATCCAGGAGCTGATGCCTCTGGCCAAGGAGCTGAT
GGCCCACAAGCCCAGCCGCAAGCTGGTGAAGCTGTACCTGCTGGGCGGCCTGCTGGCCTT
TCTCGGCGCGGTGCTCGGCCTGATGGAGACCGTGTGCAGCCCCTTCACGGCCGCCGGCCG
CCTGCGGGACCGGGAGGCCGCCGTGGCCGAGCTGCGGGCCGCCCGGGAGCGAAAGGCGCC
CCCGGAGCCGGCCCAGCTGGAGAAGGACAAGCGGCGGCAGGTGGGCCGGGGCTGCCGGGC
CCTCTCCCACCGGCTGCACGCCTCCTAGGAACCCTGCGGGGCCGCGGAGGGTGGCGGAGA
GACGGCGAGGAGGGCGAGCCAGAGCGTCGCCTTACGTTTGGACTTGCTTCTGAGAAGCCC
CTGAGTGCTAGAACTGAACTGACACTCGGATCCACCCTAAGGCGTTTGGGATGGAGTTTT
GCTGCTGTGCAGCACCGCGGAAGGCCCAGTCCAGAACGAGGCACCTGAGCGGAGTTACCT
GGCCCTTTGCACTAGGCCGAGAAGTGCTGTCTACGTTATTATTGTTACACTGTGATGATG
AGAATGATTTCAGTGGGTGTTCAGTGAACACCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAAGAGCCGCGGCTGCGGAGGCGGAGCAGGCGGAGGCGCGAGACCCACGCCCTCGGCG
ATCGCCGGCTGTGCCAGCGCTGCCTCCCGCTCGCGCGGGCCTTCAGGTCACCCCGGCCCG
AGAGCCCGGAGCCGAGATGGAAACGATCCAGGAGCTGATGCCTCTGGCCAAGGAGCTGAT
GGCCCACAAGCCCAGCCGCAAGCTGGTGAAGCTGTACCTGCTGGGCGGCCTGCTGGCCTT
TCTCGGCGCGGTGCTCGGCCTGATGGAGACCGTGTGCAGCCCCTTCACGGCCGCCGGCCG
CCTGCGGGACCGGGAGGCCGCCGTGGCCGAGCTGCGGGCCGCCCGGGAGCGAAAGGCGCC
CCCGGAGCCGGCCCAGCTGGAGAAGGACAAGCGGCGGCAGGTGGGCCGGGGCTGCCGGGC
CCTCTCCCACCGGCTGCACGCCTCCTAGGAACCCTGCGGGGCCGCGGAGGGTGGCGGAGA
GACGGCGAGGAGGGCGAGCCAGAGCGTCGCCTTACGTTTGGACTTGCTTCTGAGAAGCCC
CTGAGTGCTAGAACTGAACTGACACTCGGATCCACCCTAAGGCGTTTGGGATGGAGTTTT
GCTGCTGTGCAGCACCGCGGAAGGCCCAGTCCAGAACGAGGCACCTGAGCGGAGTTACCT
GGCCCTTTGCACTAGGCCGAGAAGTGCTGTCTACGTTATTATTGTTACACTGTGATGATG
AGAATGATTTCAGTGGGTGTTCAGTGAACACCCTTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               86-498, gnl|bosTau2|chr16 (50708511-50708913)
               

               
               86-498, gnl|Hg17|chr1 (206237374-206237821)
               

               
               86-498, gnl|Mm7|chr1 (192825492-192825080)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-498, gnl|bosTau2|chr16 (50708511-50708913)
               

               
               86-498, gnl|Hg17|chr1 (206237374-206237821)
               

               
               86-498, gnl|Mm7|chr1 (192825492-192825080)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cli (0.458435)
               

               
               mgp (0.230681)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               mgp (0.230681)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	86-498, gnl\|bosTau2\|chr16 (50708511-50708913)
	86-498, gnl\|Hg17\|chr1 (206237374-206237821)
	86-498, gnl\|Mm7\|chr1 (192825492-192825080)

	cli (0.458435)
	mgp (0.230681)
	csp (0.161186)
	eli (0.151814)
	pla (0.133672)
	spc (0.113366)
	eje (0.0988338)