Non-Coding RNA Search

Ss1.1-rplac_9033.5

Sequence:


               
               ATGGCCCGGAAGCACCCCCCTGATCCACCCGCTTCGCTCTGCTTCCTTTGTCTGCCCTTC
CCCCCTCTCAGAGCCGTCGGGGGTCAGTGGGGACACTCCCACACCCTTCCATGGTCTGTC
TCCGGCAGAAGGGACCTGGAGTCCGTGTGGAGGGGGCTTTGCCACTCACCGGAAAGTCCG
GGGCTCGGGCCCAGGGCCGGGGTGAGGGGTCACAGGGCCGATCCTTCTGACGCCCTCCCA
CAGGTCTCCTTTGCCAGGGCCTGGGGCGGGGGTGTGGGAACAGCAGGCCAGAGCCCTTAA
TCTCCCCAAGCTGATTAGGGTCTCTTAATCAGGCAGGGAGGGGCTGGTGGAGGATGGGGC
TCCCTGGTGTGGCATCTGTCCTAGCTTGCAGCCAGCCAGGCAGCTTCTTTCCCCTCCGAG
CGTCCCAAGCCCCCCATGGCAAGCCCCACATAAAAGCAGCTGCAGGTCTGCCTTTCAGGC
TGCTGCCACACTGCCCTGATCAGCCCGGAAAGTGACAAGATTTGCCCAGGGACACCTGTG
AGTGATCAATCCTGGGTCCCATTCGCTCCAATCTTGTTTCCAGTTCTGCCCACCAAGTCC
AAGCCCGGTCCCTTGGCTGGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCCCGGAAGCACCCCCCTGATCCACCCGCTTCGCTCTGCTTCCTTTGTCTGCCCTTC
CCCCCTCTCAGAGCCGTCGGGGGTCAGTGGGGACACTCCCACACCCTTCCATGGTCTGTC
TCCGGCAGAAGGGACCTGGAGTCCGTGTGGAGGGGGCTTTGCCACTCACCGGAAAGTCCG
GGGCTCGGGCCCAGGGCCGGGGTGAGGGGTCACAGGGCCGATCCTTCTGACGCCCTCCCA
CAGGTCTCCTTTGCCAGGGCCTGGGGCGGGGGTGTGGGAACAGCAGGCCAGAGCCCTTAA
TCTCCCCAAGCTGATTAGGGTCTCTTAATCAGGCAGGGAGGGGCTGGTGGAGGATGGGGC
TCCCTGGTGTGGCATCTGTCCTAGCTTGCAGCCAGCCAGGCAGCTTCTTTCCCCTCCGAG
CGTCCCAAGCCCCCCATGGCAAGCCCCACATAAAAGCAGCTGCAGGTCTGCCTTTCAGGC
TGCTGCCACACTGCCCTGATCAGCCCGGAAAGTGACAAGATTTGCCCAGGGACACCTGTG
AGTGATCAATCCTGGGTCCCATTCGCTCCAATCTTGTTTCCAGTTCTGCCCACCAAGTCC
AAGCCCGGTCCCTTGGCTGGCAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               63-169, - strand, RNAz p=0.995571
               

               
               245-489, + strand, RNAz p=0.939766

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               63-169, - strand, RNAz p=0.995571
               

               
               245-489, + strand, RNAz p=0.939766

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               25-624, gnl|bosTau2|chr19 (15230997-15231604)
               

               
               25-624, gnl|Hg17|chr17 (7846901-7846265)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-624, gnl|bosTau2|chr19 (15230997-15231604)
               

               
               25-624, gnl|Hg17|chr17 (7846901-7846265)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	63-169, - strand, RNAz p=0.995571
	245-489, + strand, RNAz p=0.939766

	25-624, gnl\|bosTau2\|chr19 (15230997-15231604)
	25-624, gnl\|Hg17\|chr17 (7846901-7846265)