Non-Coding RNA Search

Ss1.1-rplac_9905.5

Sequence:


               
               CGACAGCAGCGGCGGCGAGCGCCTCGGAGCGCAGCGGAGCAGCATCCCCCAGAGCCCCGT
TCCCCACGACGGGCCCGCCTGCCCGCCCTCCCGAGGAGCGCCGACCCGGGCCCGCGAGGG
CCGCCGCCACCCCACAGCAGATTTGGATCCCCCGCCCGGCGAGCCCCAGGCTGCTGCCTC
CCGGGGGGCCCCGGCGCAGCGGCCGCCCCTGGAGAGCCCCGGCGCCCCGCCGCCCGGCCC
CGAAGACACGGGCAGCGCCATGGCGGCCGCCAAGCCCAGCGAGCTGATGGGCATCTGCTC
CAGCTACCAGGCGGTGATGCCGCACTTCGTGTGCCTGGCCGACGAGTTCCCGCAGCCCGT
GCGGCCCGCCAAGCTGTCCAAGGGCAAGGGTCGGCTGCGGCGGCCGCGCCAGTCCCGCTT
CAAGACGCAGCCGGTGACCTTCGACGAGATCCAGGAGGTGGAGGAGGAGGGAGTGTCCCC
CATGGAGGAGGAGAAGGCCAAGAAGTCGTTCCTGCAGAGCCTGGAGTGCCTGCGCCGCAG
CACGCAGAGCCTGTCGCTGCAGCGGGAGCAACTCACCAGCTGCAAACTGAGGAACAGCCT
GGACTCTAGCGACTCCGACTCGGCCCTGTGAGGGGCGCCGCCCGCAGCCGGGACACACGC
GCCTCGGAGGCCCGCCGGCGACCGGCGTTCGAACCCCGAGAGAGCCCGCGCCCGCCTCCC
CGGGGCCCAGGAAGACCGGGAACCAGCGCCCCTCGAGCACTTGGACCTTCGCTCGGCTGC
GAACTGGTTGGGGCGCCTTGCGCCGCGCCGCGCTCACCCTCGGGCGACAGGGAGGGGGGC
CGCTTTCTTTGCCCTTGTAAATGTTTATTTTTAAACTCCTTCCAGTACGAACTCTGCTGT
GAGTGTGTGCGGGGACGCGCCCGCGCCGAGTCGCCCCGGGTCACCAGGGCTTCTCGGAGA
GCAGCTCCACGCCCTTGTCCGATGGTTGCAACTCCGACTTTGCACACCGCTCCACCGTGC
CCCCCAGCGCACTCCCGTTCACACTCACGCCGACACACTCTCGCTGAACACTTTTGTAAT
TGTTAGGCTCGGCCGATGGGACTTGGAGCGCAGCTCAGTTGCTGCTGTGGCCGAAGGATT
GATATTTATTTTTGCATTGCGATGGCTGACGGCGTTTATTTAACGATCTTTTTACCTGAT
ATGTCTGTGAGGCTCCCGAACGGAGACAAATAAAGTCAATATATTTGCACAGTGAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACAGCAGCGGCGGCGAGCGCCTCGGAGCGCAGCGGAGCAGCATCCCCCAGAGCCCCGT
TCCCCACGACGGGCCCGCCTGCCCGCCCTCCCGAGGAGCGCCGACCCGGGCCCGCGAGGG
CCGCCGCCACCCCACAGCAGATTTGGATCCCCCGCCCGGCGAGCCCCAGGCTGCTGCCTC
CCGGGGGGCCCCGGCGCAGCGGCCGCCCCTGGAGAGCCCCGGCGCCCCGCCGCCCGGCCC
CGAAGACACGGGCAGCGCCATGGCGGCCGCCAAGCCCAGCGAGCTGATGGGCATCTGCTC
CAGCTACCAGGCGGTGATGCCGCACTTCGTGTGCCTGGCCGACGAGTTCCCGCAGCCCGT
GCGGCCCGCCAAGCTGTCCAAGGGCAAGGGTCGGCTGCGGCGGCCGCGCCAGTCCCGCTT
CAAGACGCAGCCGGTGACCTTCGACGAGATCCAGGAGGTGGAGGAGGAGGGAGTGTCCCC
CATGGAGGAGGAGAAGGCCAAGAAGTCGTTCCTGCAGAGCCTGGAGTGCCTGCGCCGCAG
CACGCAGAGCCTGTCGCTGCAGCGGGAGCAACTCACCAGCTGCAAACTGAGGAACAGCCT
GGACTCTAGCGACTCCGACTCGGCCCTGTGAGGGGCGCCGCCCGCAGCCGGGACACACGC
GCCTCGGAGGCCCGCCGGCGACCGGCGTTCGAACCCCGAGAGAGCCCGCGCCCGCCTCCC
CGGGGCCCAGGAAGACCGGGAACCAGCGCCCCTCGAGCACTTGGACCTTCGCTCGGCTGC
GAACTGGTTGGGGCGCCTTGCGCCGCGCCGCGCTCACCCTCGGGCGACAGGGAGGGGGGC
CGCTTTCTTTGCCCTTGTAAATGTTTATTTTTAAACTCCTTCCAGTACGAACTCTGCTGT
GAGTGTGTGCGGGGACGCGCCCGCGCCGAGTCGCCCCGGGTCACCAGGGCTTCTCGGAGA
GCAGCTCCACGCCCTTGTCCGATGGTTGCAACTCCGACTTTGCACACCGCTCCACCGTGC
CCCCCAGCGCACTCCCGTTCACACTCACGCCGACACACTCTCGCTGAACACTTTTGTAAT
TGTTAGGCTCGGCCGATGGGACTTGGAGCGCAGCTCAGTTGCTGCTGTGGCCGAAGGATT
GATATTTATTTTTGCATTGCGATGGCTGACGGCGTTTATTTAACGATCTTTTTACCTGAT
ATGTCTGTGAGGCTCCCGAACGGAGACAAATAAAGTCAATATATTTGCACAGTGAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7Z7L8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7Z7L8_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1145-1254, gnl|bosTau2|chrX (25674170-25674060)
               

               
               1145-1254, gnl|Hg17|chr11 (43921897-43922007)
               

               
               1145-1254, gnl|Mm7|chr2 (93806640-93806528)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1145-1254, gnl|bosTau2|chrX (25674170-25674060)
               

               
               1145-1254, gnl|Hg17|chr11 (43921897-43922007)
               

               
               1145-1254, gnl|Mm7|chr2 (93806640-93806528)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               pla (5.48055)
               

               
               clu (0.717875)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               mcp (0.341297)
               

               
               cki (0.330469)
               

               
               cga (0.279096)
               

               
               cly (0.241284)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (5.48055)
               

               
               clu (0.717875)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               mcp (0.341297)
               

               
               cki (0.330469)
               

               
               cga (0.279096)
               

               
               cly (0.241284)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

	1145-1254, gnl\|bosTau2\|chrX (25674170-25674060)
	1145-1254, gnl\|Hg17\|chr11 (43921897-43922007)
	1145-1254, gnl\|Mm7\|chr2 (93806640-93806528)

	pla (5.48055)
	clu (0.717875)
	cov (0.396458)
	fcc (0.39557)
	mcp (0.341297)
	cki (0.330469)
	cga (0.279096)
	cly (0.241284)
	nlu (0.191681)
	cut (0.169924)
	nmm (0.132802)
	ecc (0.115035)