Non-Coding RNA Search

Ss1.1-rplac_9929.5

Sequence:


               
               GAGGCGCCGCCGAGGCAGCGAGAGGGGCTGACAGCGCGGAGCTGGCGCTGCCGAGCGCAA
GGAGCCGTGCCGGTTCCTCCGGCCGGCGTCTGCGAGGACACCGGCGTCTGACTCGCTCGG
CTTCGGGGATCTACACAGAGGTGGAGCAATGCTTGTGACTCTGCGGCTCCTCAAAGGCCC
CTAGAAGCCTGTTTCTCCGCACAGCCCAGAACCTCAGGCCCCATGGAGCCCCCAATCCCA
CAGAGCGTCGCCCTGACTCCCAGCTCGGTCATGGTCCAGCCCCTTCTGGACAGCCGTATG
GCCCACAGCCGGCTCCAGCACCCGCTCACCATCCTCCCCATCGACCAGATAAAGACCAGC
CACGTGGAGAACGACTACATAGACAGCCCTGGCTTGGCCCCCGCCACTGGCCCCAAGCGG
ACCCGGAGCGGAGCCCCGGAGCTGGCCCCGATGCCCGCCCGCTGTGACCAGGATGCCACC
CACCACTGGATTTCCTTCAGCGGGCGCCCCAGCTCCGTGAGCAGCAGCAGCAGCACGTCC
TCCGACCAGCGCCTCTTGGACCACATGGCCCCACCACCCGTGGCCGACCAGGCCTCCCCG
AGGGCCGTGCGCATCCAGCCCAAGGTGATCCACTGCAAGCCGCTGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCGCCGCCGAGGCAGCGAGAGGGGCTGACAGCGCGGAGCTGGCGCTGCCGAGCGCAA
GGAGCCGTGCCGGTTCCTCCGGCCGGCGTCTGCGAGGACACCGGCGTCTGACTCGCTCGG
CTTCGGGGATCTACACAGAGGTGGAGCAATGCTTGTGACTCTGCGGCTCCTCAAAGGCCC
CTAGAAGCCTGTTTCTCCGCACAGCCCAGAACCTCAGGCCCCATGGAGCCCCCAATCCCA
CAGAGCGTCGCCCTGACTCCCAGCTCGGTCATGGTCCAGCCCCTTCTGGACAGCCGTATG
GCCCACAGCCGGCTCCAGCACCCGCTCACCATCCTCCCCATCGACCAGATAAAGACCAGC
CACGTGGAGAACGACTACATAGACAGCCCTGGCTTGGCCCCCGCCACTGGCCCCAAGCGG
ACCCGGAGCGGAGCCCCGGAGCTGGCCCCGATGCCCGCCCGCTGTGACCAGGATGCCACC
CACCACTGGATTTCCTTCAGCGGGCGCCCCAGCTCCGTGAGCAGCAGCAGCAGCACGTCC
TCCGACCAGCGCCTCTTGGACCACATGGCCCCACCACCCGTGGCCGACCAGGCCTCCCCG
AGGGCCGTGCGCATCCAGCCCAAGGTGATCCACTGCAAGCCGCTGGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12655915|gb|AAK00653.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12655915|gb|AAK00653.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               531-648, - strand, RNAz p=0.716947

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               531-648, - strand, RNAz p=0.716947

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               176-648, gnl|bosTau2|chr7 (36652533-36653005)
               

               
               176-648, gnl|Hg17|chr5 (141674904-141674432)
               

               
               176-648, gnl|Mm7|chr18 (38966956-38966481)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-648, gnl|bosTau2|chr7 (36652533-36653005)
               

               
               176-648, gnl|Hg17|chr5 (141674904-141674432)
               

               
               176-648, gnl|Mm7|chr18 (38966956-38966481)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	176-648, gnl\|bosTau2\|chr7 (36652533-36653005)
	176-648, gnl\|Hg17\|chr5 (141674904-141674432)
	176-648, gnl\|Mm7\|chr18 (38966956-38966481)