Non-Coding RNA Search

Ss1.1-rpldo0102_o11.5S

Sequence:


               
               AAAAGAATGTTGCAAATTTGTTCAATGCCAAAAAGGACAGTTTAATTTTGTACAGATTAT
GCTTACCTCAGGTTTCTTTAGTGTGCTTGAATGCCCTTCTTCCCATATAACACGTATCTT
ATTACTTTGGCAATGAGTACCTTTTCTTTAAGTTTTAAAAAACTGGAATAATTACATCTA
TCTTATTTTTGCTGTTTATATTTAGGGGTTTTTGTTGATAAATCAAGTCTTGGTTGTGGC
TTGCTGAATTAAATATTTATGAGTGGTGCATTTTTAAGTATAGTAAACAAGACACCATAT
TAAGTACAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGAATGTTGCAAATTTGTTCAATGCCAAAAAGGACAGTTTAATTTTGTACAGATTAT
GCTTACCTCAGGTTTCTTTAGTGTGCTTGAATGCCCTTCTTCCCATATAACACGTATCTT
ATTACTTTGGCAATGAGTACCTTTTCTTTAAGTTTTAAAAAACTGGAATAATTACATCTA
TCTTATTTTTGCTGTTTATATTTAGGGGTTTTTGTTGATAAATCAAGTCTTGGTTGTGGC
TTGCTGAATTAAATATTTATGAGTGGTGCATTTTTAAGTATAGTAAACAAGACACCATAT
TAAGTACAGTGA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-312, gnl|bosTau2|chr15 (41483581-41483255)
               

               
               1-312, gnl|canFam2|chr32 (25612325-25612955)
               

               
               1-312, gnl|echTel1|scaffold_312622 (39601-38874)
               

               
               1-312, gnl|fr1|chrUn (215886835-215887398)
               

               
               1-312, gnl|galGal2|chr4 (60771797-60772504)
               

               
               1-312, gnl|hg17|chr4 (102302999-102303621)
               

               
               1-312, gnl|Hg17|chr4 (102303623-102303314)
               

               
               1-312, gnl|loxAfr1|scaffold_19296 (23361-23976)
               

               
               1-312, gnl|mm7|chr3 (136730767-136730114)
               

               
               1-312, gnl|Mm7|chr3 (136730107-136730427)
               

               
               1-312, gnl|monDom2|scaffold_37 (11356901-11356258)
               

               
               1-312, gnl|oryCun1|scaffold_213494 (216621-216002)
               

               
               1-312, gnl|panTro1|chr3 (118687097-118687720)
               

               
               1-312, gnl|rheMac2|chr5 (93986964-93987585)
               

               
               1-312, gnl|rn3|chr2 (234396692-234396013)
               

               
               1-312, gnl|xenTro1|scaffold_326 (987449-986797)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-312, gnl|bosTau2|chr15 (41483581-41483255)
               

               
               1-312, gnl|canFam2|chr32 (25612325-25612955)
               

               
               1-312, gnl|echTel1|scaffold_312622 (39601-38874)
               

               
               1-312, gnl|fr1|chrUn (215886835-215887398)
               

               
               1-312, gnl|galGal2|chr4 (60771797-60772504)
               

               
               1-312, gnl|hg17|chr4 (102302999-102303621)
               

               
               1-312, gnl|Hg17|chr4 (102303623-102303314)
               

               
               1-312, gnl|loxAfr1|scaffold_19296 (23361-23976)
               

               
               1-312, gnl|mm7|chr3 (136730767-136730114)
               

               
               1-312, gnl|Mm7|chr3 (136730107-136730427)
               

               
               1-312, gnl|monDom2|scaffold_37 (11356901-11356258)
               

               
               1-312, gnl|oryCun1|scaffold_213494 (216621-216002)
               

               
               1-312, gnl|panTro1|chr3 (118687097-118687720)
               

               
               1-312, gnl|rheMac2|chr5 (93986964-93987585)
               

               
               1-312, gnl|rn3|chr2 (234396692-234396013)
               

               
               1-312, gnl|xenTro1|scaffold_326 (987449-986797)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	1-312, gnl\|bosTau2\|chr15 (41483581-41483255)
	1-312, gnl\|canFam2\|chr32 (25612325-25612955)
	1-312, gnl\|echTel1\|scaffold_312622 (39601-38874)
	1-312, gnl\|fr1\|chrUn (215886835-215887398)
	1-312, gnl\|galGal2\|chr4 (60771797-60772504)
	1-312, gnl\|hg17\|chr4 (102302999-102303621)
	1-312, gnl\|Hg17\|chr4 (102303623-102303314)
	1-312, gnl\|loxAfr1\|scaffold_19296 (23361-23976)
	1-312, gnl\|mm7\|chr3 (136730767-136730114)
	1-312, gnl\|Mm7\|chr3 (136730107-136730427)
	1-312, gnl\|monDom2\|scaffold_37 (11356901-11356258)
	1-312, gnl\|oryCun1\|scaffold_213494 (216621-216002)
	1-312, gnl\|panTro1\|chr3 (118687097-118687720)
	1-312, gnl\|rheMac2\|chr5 (93986964-93987585)
	1-312, gnl\|rn3\|chr2 (234396692-234396013)
	1-312, gnl\|xenTro1\|scaffold_326 (987449-986797)