Ss1.1-rpldo0103_a1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTGCAGGGCGAGACAAGCGGCCCCTTCGCGTTGCGCAGGGACTGAGCAGGGGTGGCCG TGTCAGGCCGGGCAGAGAAAGCGAGAGCGCGGCTCCCGGAGGCGGTGTGCGCCCGGCTGT CACCATGAGTGATCAGGCTTGGAGCTTTCTGAAGGACTTCTTGGCTGGCGGCGTCGCCGC TGCCATCTCCAAGACCGCGGTCGCCCCCATCGAGAGGGTCAAACTGCTGCTGCAGGTCCA GCATGCCAGCAAACAGATCAGTGCTGAGAAGCAGTACAAAGGGATCATTGATTGCGTGGT GAGAATCCCCAAGGAGCAGGGCTTTCTCTCCTTCTGGAGGGGAAACCTGGCCAACGTGAT CCGTTACTTTCCCACCCAAGCTCTCAACTTCGCCTTCAAGGACAAGTACAAGCAGATCTT CCTGGGGGGTGTGGACCGGCATAAGCAGTTCTGGCGCTACTTTGCTGGTAACCTGGCTTC CGGTGGGGCAGCTGGGGCCACCTCCCTCTGCTTTGTCTACCCGCTGGACTTTGCTAGGAC CAGGCTGGCTGCCGATGTGGGCAAGGGTGCCGCCCAGCGTGAGTTCACTGGCCTGGGCAA CTGTCTCGCCAAGATCTTCAAGTCCGATGGCCTGCGGGGTCTCTACCAGGGTTTCAACGT CTCTGTCCAGGGCATCATTATCTACAGAGCCGCCTACTTTGGAGTCTATGATACTGCCAA GGGGATGCTGCCCGACCCCAAGAATGTGCACATTATCGTAAGCTGGATGATTGCCCAGAC CGTGACGGCGGTGGCAGGGCTGGTGTCCTACCCCTTTGACACTGTCCGCCGTAGGATGAT GATGCAGTCTGGCCGGAAAGGGGCGGATATTATGTACACTGGGACAGTGGACTGCTGGAG GAAGATAGCAAAAGATGAAGGACCCAAGGCTTTCTTCAAAGGTGCCTGGTCAAACGTATT GAGAGGCATGGGCGGTGCTTTTGTATTGGTATTGTATGATGAGATCAAAAAGTATGTCTA ATGTAATTAAAACTCAAGTTCCTTGGTTCCAGATCCATTGTGTGGTTTAATAGACTCTTC CTAGGGGAAGTCAAAGGAAAGATCTGGGATAAAACCAGACTGAAAGGAATACCTCAGAAA AAAAAAAAATGCTTCACTGAGTGTCCATTAAACCACAGATGTATTTTGTATTTATTTTAC ATTTAAATTCCCATAATATAAAGTAACTTATCATACTTATACAATTAACTGAAGAACTGA TAATGAAGAAAATAACTGAATGTGAAATGTCAATAAAGACCACTTAATGCATGTTCTCTA TTTTACTGAATTCTTATTAACTGCCAAATGGATTAAAACAAGACCATAAATCTTAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTGCAGGGCGAGACAAGCGGCCCCTTCGCGTTGCGCAGGGACTGAGCAGGGGTGGCCG TGTCAGGCCGGGCAGAGAAAGCGAGAGCGCGGCTCCCGGAGGCGGTGTGCGCCCGGCTGT CACCATGAGTGATCAGGCTTGGAGCTTTCTGAAGGACTTCTTGGCTGGCGGCGTCGCCGC TGCCATCTCCAAGACCGCGGTCGCCCCCATCGAGAGGGTCAAACTGCTGCTGCAGGTCCA GCATGCCAGCAAACAGATCAGTGCTGAGAAGCAGTACAAAGGGATCATTGATTGCGTGGT GAGAATCCCCAAGGAGCAGGGCTTTCTCTCCTTCTGGAGGGGAAACCTGGCCAACGTGAT CCGTTACTTTCCCACCCAAGCTCTCAACTTCGCCTTCAAGGACAAGTACAAGCAGATCTT CCTGGGGGGTGTGGACCGGCATAAGCAGTTCTGGCGCTACTTTGCTGGTAACCTGGCTTC CGGTGGGGCAGCTGGGGCCACCTCCCTCTGCTTTGTCTACCCGCTGGACTTTGCTAGGAC CAGGCTGGCTGCCGATGTGGGCAAGGGTGCCGCCCAGCGTGAGTTCACTGGCCTGGGCAA CTGTCTCGCCAAGATCTTCAAGTCCGATGGCCTGCGGGGTCTCTACCAGGGTTTCAACGT CTCTGTCCAGGGCATCATTATCTACAGAGCCGCCTACTTTGGAGTCTATGATACTGCCAA GGGGATGCTGCCCGACCCCAAGAATGTGCACATTATCGTAAGCTGGATGATTGCCCAGAC CGTGACGGCGGTGGCAGGGCTGGTGTCCTACCCCTTTGACACTGTCCGCCGTAGGATGAT GATGCAGTCTGGCCGGAAAGGGGCGGATATTATGTACACTGGGACAGTGGACTGCTGGAG GAAGATAGCAAAAGATGAAGGACCCAAGGCTTTCTTCAAAGGTGCCTGGTCAAACGTATT GAGAGGCATGGGCGGTGCTTTTGTATTGGTATTGTATGATGAGATCAAAAAGTATGTCTA ATGTAATTAAAACTCAAGTTCCTTGGTTCCAGATCCATTGTGTGGTTTAATAGACTCTTC CTAGGGGAAGTCAAAGGAAAGATCTGGGATAAAACCAGACTGAAAGGAATACCTCAGAAA AAAAAAAAATGCTTCACTGAGTGTCCATTAAACCACAGATGTATTTTGTATTTATTTTAC ATTTAAATTCCCATAATATAAAGTAACTTATCATACTTATACAATTAACTGAAGAACTGA TAATGAAGAAAATAACTGAATGTGAAATGTCAATAAAGACCACTTAATGCATGTTCTCTA TTTTACTGAATTCTTATTAACTGCCAAATGGATTAAAACAAGACCATAAATCTTAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 89 entry(ies) | More info |
| Aligned organism(s): 89 entry(ies) | Help | Less info |
| 151-321, gnl|bosTau2|chr17 (18482471-18482641) | |
| 151-321, gnl|Hg17|chr4 (129009368-129009538) | |
| 151-321, gnl|Mm7|chr3 (40475708-40475878) | |
| 722-861, gnl|bosTau2|chrX (47938837-47938698) | |
| 722-861, gnl|canFam2|chrX (880028-880194) | |
| 722-861, gnl|canFam2|chrX (880184-880041) | |
| 722-861, gnl|canFam2|chrX (880093-880182) | |
| 722-861, gnl|canFam2|chrX (880028-880194) | |
| 722-861, gnl|canFam2|chrX (880184-880045) | |
| 722-861, gnl|danRer3|chr14 (54591690-54591834) | |
| 722-861, gnl|danRer3|chr14 (54591913-54591690) | |
| 722-861, gnl|danRer3|chr14 (54591740-54591911) | |
| 722-861, gnl|danRer3|chr14 (54591690-54591834) | |
| 722-861, gnl|danRer3|chr14 (54591833-54591609) | |
| 722-861, gnl|dasNov1|scaffold_97502 (3109-3204) | |
| 722-861, gnl|dasNov1|scaffold_97502 (3208-3107) | |
| 722-861, gnl|dasNov1|scaffold_97502 (3122-3206) | |
| 722-861, gnl|dasNov1|scaffold_97502 (3109-3204) | |
| 722-861, gnl|dasNov1|scaffold_97502 (3208-3110) | |
| 722-861, gnl|echTel1|scaffold_201129 (10049-9907) | |
| 722-861, gnl|echTel1|scaffold_201129 (9908-10051) | |
| 722-861, gnl|echTel1|scaffold_201129 (9999-9910) | |
| 722-861, gnl|echTel1|scaffold_201129 (10049-9907) | |
| 722-861, gnl|echTel1|scaffold_201129 (9908-10048) | |
| 722-861, gnl|fr1|chrUn (149513105-149512952) | |
| 722-861, gnl|fr1|chrUn (149512872-149513105) | |
| 722-861, gnl|fr1|chrUn (149513055-149512874) | |
| 722-861, gnl|fr1|chrUn (149513105-149512952) | |
| 722-861, gnl|fr1|chrUn (149512962-149513190) | |
| 722-861, gnl|galGal2|chr1 (122196382-122196228) | |
| 722-861, gnl|galGal2|chr1 (122196330-122196242) | |
| 722-861, gnl|galGal2|chr1 (122196382-122196228) | |
| 722-861, gnl|galGal2|chr1 (122196241-122196377) | |
| 722-861, gnl|galGal2|chr4 (39970993-39970854) | |
| 722-861, gnl|hg17|chr1 (51887353-51887490) | |
| 722-861, gnl|hg17|chr20 (21671093-21671183) | |
| 722-861, gnl|hg17|chr9 (31244479-31244619) | |
| 722-861, gnl|hg17|chrX (1549995-1550151) | |
| 722-861, gnl|Hg17|chrX (1550140-1550001) | |
| 722-861, gnl|hg17|chrY (1549995-1550151) | |
| 722-861, gnl|loxAfr1|scaffold_47065 (5144-5299) | |
| 722-861, gnl|loxAfr1|scaffold_47065 (5289-5147) | |
| 722-861, gnl|loxAfr1|scaffold_47065 (5198-5286) | |
| 722-861, gnl|loxAfr1|scaffold_47065 (5144-5299) | |
| 722-861, gnl|loxAfr1|scaffold_47065 (5289-5150) | |
| 722-861, gnl|mm7|chr5 (96478776-96478919) | |
| 722-861, gnl|mm7|chr5 (96478868-96478778) | |
| 722-861, gnl|mm7|chr5 (96478776-96478916) | |
| 722-861, gnl|mm7|chr8 (44986265-44986413) | |
| 722-861, gnl|mm7|chr8 (44986265-44986413) | |
| 722-861, gnl|Mm7|chr8 (44986408-44986269) | |
| 722-861, gnl|monDom2|scaffold_11 (3921796-3921642) | |
| 722-861, gnl|monDom2|scaffold_11 (3921796-3921642) | |
| 722-861, gnl|monDom2|scaffold_23 (42397075-42397218) | |
| 722-861, gnl|monDom2|scaffold_24 (41326349-41326439) | |
| 722-861, gnl|monDom2|scaffold_24 (41326441-41326301) | |
| 722-861, gnl|oryCun1|scaffold_169642 (1896-2036) | |
| 722-861, gnl|oryCun1|scaffold_174777 (9339-9243) | |
| 722-861, gnl|oryCun1|scaffold_193502 (7031-7185) | |
| 722-861, gnl|oryCun1|scaffold_193502 (7031-7185) | |
| 722-861, gnl|oryCun1|scaffold_208776 (44305-44226) | |
| 722-861, gnl|panTro1|chr1 (50111418-50111556) | |
| 722-861, gnl|panTro1|chr11 (31717479-31717619) | |
| 722-861, gnl|panTro1|chr21 (21609100-21609190) | |
| 722-861, gnl|panTro1|chrX (1244983-1245150) | |
| 722-861, gnl|panTro1|chrX (1244983-1245150) | |
| 722-861, gnl|rheMac2|chr1 (54529623-54529761) | |
| 722-861, gnl|rheMac2|chr10 (55067235-55067325) | |
| 722-861, gnl|rheMac2|chr15 (45906639-45906778) | |
| 722-861, gnl|rheMac2|chr15 (45906639-45906778) | |
| 722-861, gnl|rheMac2|chr15 (45906780-45906640) | |
| 722-861, gnl|rn3|chr16 (49356159-49356011) | |
| 722-861, gnl|rn3|chr16 (49356159-49356011) | |
| 722-861, gnl|rn3|chr18 (71927018-71927161) | |
| 722-861, gnl|rn3|chr18 (71927110-71927020) | |
| 722-861, gnl|rn3|chr18 (71927018-71927158) | |
| 722-861, gnl|tetNig1|chr7 (4324519-4324374) | |
| 722-861, gnl|tetNig1|chr7 (4324296-4324519) | |
| 722-861, gnl|tetNig1|chr7 (4324469-4324298) | |
| 722-861, gnl|tetNig1|chr7 (4324519-4324374) | |
| 722-861, gnl|tetNig1|chr7 (4324376-4324599) | |
| 722-861, gnl|xenTro1|scaffold_263 (763291-763141) | |
| 722-861, gnl|xenTro1|scaffold_263 (763148-763291) | |
| 722-861, gnl|xenTro1|scaffold_263 (763239-763150) | |
| 722-861, gnl|xenTro1|scaffold_263 (763291-763141) | |
| 722-861, gnl|xenTro1|scaffold_263 (763148-763287) | |
| 863-1375, gnl|bosTau2|chr27 (9686461-9685949) | |
| 863-1375, gnl|Hg17|chr4 (186443116-186443639) | |
| 863-1375, gnl|Mm7|chr8 (44985490-44984988) |
| Aligned organism(s): 89 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 151-321, gnl|bosTau2|chr17 (18482471-18482641) | |
| 151-321, gnl|Hg17|chr4 (129009368-129009538) | |
| 151-321, gnl|Mm7|chr3 (40475708-40475878) | |
| 722-861, gnl|bosTau2|chrX (47938837-47938698) | |
| 722-861, gnl|canFam2|chrX (880028-880194) | |
| 722-861, gnl|canFam2|chrX (880184-880041) | |
| 722-861, gnl|canFam2|chrX (880093-880182) | |
| 722-861, gnl|canFam2|chrX (880028-880194) | |
| 722-861, gnl|canFam2|chrX (880184-880045) | |
| 722-861, gnl|danRer3|chr14 (54591690-54591834) | |
| 722-861, gnl|danRer3|chr14 (54591913-54591690) | |
| 722-861, gnl|danRer3|chr14 (54591740-54591911) | |
| 722-861, gnl|danRer3|chr14 (54591690-54591834) | |
| 722-861, gnl|danRer3|chr14 (54591833-54591609) | |
| 722-861, gnl|dasNov1|scaffold_97502 (3109-3204) | |
| 722-861, gnl|dasNov1|scaffold_97502 (3208-3107) | |
| 722-861, gnl|dasNov1|scaffold_97502 (3122-3206) | |
| 722-861, gnl|dasNov1|scaffold_97502 (3109-3204) | |
| 722-861, gnl|dasNov1|scaffold_97502 (3208-3110) | |
| 722-861, gnl|echTel1|scaffold_201129 (10049-9907) | |
| 722-861, gnl|echTel1|scaffold_201129 (9908-10051) | |
| 722-861, gnl|echTel1|scaffold_201129 (9999-9910) | |
| 722-861, gnl|echTel1|scaffold_201129 (10049-9907) | |
| 722-861, gnl|echTel1|scaffold_201129 (9908-10048) | |
| 722-861, gnl|fr1|chrUn (149513105-149512952) | |
| 722-861, gnl|fr1|chrUn (149512872-149513105) | |
| 722-861, gnl|fr1|chrUn (149513055-149512874) | |
| 722-861, gnl|fr1|chrUn (149513105-149512952) | |
| 722-861, gnl|fr1|chrUn (149512962-149513190) | |
| 722-861, gnl|galGal2|chr1 (122196382-122196228) | |
| 722-861, gnl|galGal2|chr1 (122196330-122196242) | |
| 722-861, gnl|galGal2|chr1 (122196382-122196228) | |
| 722-861, gnl|galGal2|chr1 (122196241-122196377) | |
| 722-861, gnl|galGal2|chr4 (39970993-39970854) | |
| 722-861, gnl|hg17|chr1 (51887353-51887490) | |
| 722-861, gnl|hg17|chr20 (21671093-21671183) | |
| 722-861, gnl|hg17|chr9 (31244479-31244619) | |
| 722-861, gnl|hg17|chrX (1549995-1550151) | |
| 722-861, gnl|Hg17|chrX (1550140-1550001) | |
| 722-861, gnl|hg17|chrY (1549995-1550151) | |
| 722-861, gnl|loxAfr1|scaffold_47065 (5144-5299) | |
| 722-861, gnl|loxAfr1|scaffold_47065 (5289-5147) | |
| 722-861, gnl|loxAfr1|scaffold_47065 (5198-5286) | |
| 722-861, gnl|loxAfr1|scaffold_47065 (5144-5299) | |
| 722-861, gnl|loxAfr1|scaffold_47065 (5289-5150) | |
| 722-861, gnl|mm7|chr5 (96478776-96478919) | |
| 722-861, gnl|mm7|chr5 (96478868-96478778) | |
| 722-861, gnl|mm7|chr5 (96478776-96478916) | |
| 722-861, gnl|mm7|chr8 (44986265-44986413) | |
| 722-861, gnl|mm7|chr8 (44986265-44986413) | |
| 722-861, gnl|Mm7|chr8 (44986408-44986269) | |
| 722-861, gnl|monDom2|scaffold_11 (3921796-3921642) | |
| 722-861, gnl|monDom2|scaffold_11 (3921796-3921642) | |
| 722-861, gnl|monDom2|scaffold_23 (42397075-42397218) | |
| 722-861, gnl|monDom2|scaffold_24 (41326349-41326439) | |
| 722-861, gnl|monDom2|scaffold_24 (41326441-41326301) | |
| 722-861, gnl|oryCun1|scaffold_169642 (1896-2036) | |
| 722-861, gnl|oryCun1|scaffold_174777 (9339-9243) | |
| 722-861, gnl|oryCun1|scaffold_193502 (7031-7185) | |
| 722-861, gnl|oryCun1|scaffold_193502 (7031-7185) | |
| 722-861, gnl|oryCun1|scaffold_208776 (44305-44226) | |
| 722-861, gnl|panTro1|chr1 (50111418-50111556) | |
| 722-861, gnl|panTro1|chr11 (31717479-31717619) | |
| 722-861, gnl|panTro1|chr21 (21609100-21609190) | |
| 722-861, gnl|panTro1|chrX (1244983-1245150) | |
| 722-861, gnl|panTro1|chrX (1244983-1245150) | |
| 722-861, gnl|rheMac2|chr1 (54529623-54529761) | |
| 722-861, gnl|rheMac2|chr10 (55067235-55067325) | |
| 722-861, gnl|rheMac2|chr15 (45906639-45906778) | |
| 722-861, gnl|rheMac2|chr15 (45906639-45906778) | |
| 722-861, gnl|rheMac2|chr15 (45906780-45906640) | |
| 722-861, gnl|rn3|chr16 (49356159-49356011) | |
| 722-861, gnl|rn3|chr16 (49356159-49356011) | |
| 722-861, gnl|rn3|chr18 (71927018-71927161) | |
| 722-861, gnl|rn3|chr18 (71927110-71927020) | |
| 722-861, gnl|rn3|chr18 (71927018-71927158) | |
| 722-861, gnl|tetNig1|chr7 (4324519-4324374) | |
| 722-861, gnl|tetNig1|chr7 (4324296-4324519) | |
| 722-861, gnl|tetNig1|chr7 (4324469-4324298) | |
| 722-861, gnl|tetNig1|chr7 (4324519-4324374) | |
| 722-861, gnl|tetNig1|chr7 (4324376-4324599) | |
| 722-861, gnl|xenTro1|scaffold_263 (763291-763141) | |
| 722-861, gnl|xenTro1|scaffold_263 (763148-763291) | |
| 722-861, gnl|xenTro1|scaffold_263 (763239-763150) | |
| 722-861, gnl|xenTro1|scaffold_263 (763291-763141) | |
| 722-861, gnl|xenTro1|scaffold_263 (763148-763287) | |
| 863-1375, gnl|bosTau2|chr27 (9686461-9685949) | |
| 863-1375, gnl|Hg17|chr4 (186443116-186443639) | |
| 863-1375, gnl|Mm7|chr8 (44985490-44984988) |
| Expressed library(ies): 53 entry(ies) | More info |
| Expressed library(ies): 53 entry(ies) | Help | Less info |
| che (14.4493) | |
| ssp (8.67326) | |
| ldo (7.4692) | |
| ste (7.03083) | |
| hea (6.74847) | |
| bfe (5.54473) | |
| hlv (5.15249) | |
| mas (3.99579) | |
| tbr (3.70028) | |
| isp (3.15789) | |
| nms (2.78015) | |
| sme (2.74893) | |
| vin (2.66046) | |
| cki (1.15664) | |
| ton (1.053) | |
| spc (1.02029) | |
| cst (0.980255) | |
| cje (0.826173) | |
| aor (0.585823) | |
| pro (0.512033) | |
| bla (0.497389) | |
| cbe (0.478469) | |
| fco (0.471624) | |
| ret (0.3862) | |
| nep (0.36785) | |
| nje (0.33184) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| ute (0.265569) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 53 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (14.4493) | |
| ssp (8.67326) | |
| ldo (7.4692) | |
| ste (7.03083) | |
| hea (6.74847) | |
| bfe (5.54473) | |
| hlv (5.15249) | |
| mas (3.99579) | |
| tbr (3.70028) | |
| isp (3.15789) | |
| nms (2.78015) | |
| sme (2.74893) | |
| vin (2.66046) | |
| cki (1.15664) | |
| ton (1.053) | |
| spc (1.02029) | |
| cst (0.980255) | |
| cje (0.826173) | |
| aor (0.585823) | |
| pro (0.512033) | |
| bla (0.497389) | |
| cbe (0.478469) | |
| fco (0.471624) | |
| ret (0.3862) | |
| nep (0.36785) | |
| nje (0.33184) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| ute (0.265569) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |