Non-Coding RNA Search

Ss1.1-rpldo0103_a14.5

Sequence:


               
               TTTTTTTAAAGCATCGTTTACGTGTAGTTTTCACCACATGTGCTGTTGTAAATGCTAAGG
CCTGAGGTTTGCGGGTGAAGACTCCCCTGCCTGGAGACAGGGGTCCTCAGGTCTGGGACC
TGACCCTTTGCCTCTAGATACCGCGTGTACCGCGCAAGCCAAGGAATTGCCTGAGGAAGC
TTTGTTTCTTTAAAAGGTCAGCACAAAGGGCACAGGTAAGGTTTTCTTAGGGTAATTTCC
AAGCTGGACCTGTTACAGGGAGGTCGTGTGATTTTCTGAGCTGAGTTCAAGATCAGCTTA
TTAAGATCTGGCATCTTGAAACACCGGTCCTTTCCCCGCTCTGCACGGCGCCTGGGATTC
TGTTGGATCAGATGGCCCGACACCTGTCGTTGGGGGAGGGGAGGCGCGTCCGCTCCCGGC
CTTCCCTCGCGTGTCCGTCCTCGGTCCCTGCGACGCGGCCGCAACCCCACGTGGGCCCTG
TCTTGCCCCAGGTGAAGCTGTCTGCCTTTTCTCAGTCTGTACAGAAGAGTAGAGTTTTTG
TGGCAAAAGAGTGCAGACCTTGTATGCGAGTAAAATTTTGTATGAAGTAGTTGATCAAAT
TGTATCATAAAATTTATTTTTCTTTTATACATAAATCATTACAAATAATCACCTATTTTT
CTATAAGTGCATGGGTTGCAAGTTCGGTTCACACCTGGAAAAAGCATTTATAAGCGTTTG
GATTGTTTAAATGTTAAAGTGTGTGCGGTTTGTTTTTCACTGAAGCAAGTTCAGGGAACT
GTATCTTTTCATTCATATTGTGACAGCACTTTTCTGTATAAATGGAAGTTCCTTAGGGCA
GATAAGCATTTATCAGAAACTTTAAGATCGCTCATGAAGTTTTAGAAAGATTCTGCATGA
AGGTATTACTGTATCTTTTCAAAAATGAATTAAATTCCGATGTTATTTATTGTTTTGATA
AAATACACCAATGGGATTATCACATGTTTTCCTCTGGTCTGTAAGTTTTCAGAAAGTACT
GGATTCATACATCAGAAATTTTGACTTAAAGGGTGAGCTGATACTAATTTATATTTAAAG
GAAATGTGTCAACTTTTGAAAAAAGTAGTTTAAAACTAAAATTCAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTAAAGCATCGTTTACGTGTAGTTTTCACCACATGTGCTGTTGTAAATGCTAAGG
CCTGAGGTTTGCGGGTGAAGACTCCCCTGCCTGGAGACAGGGGTCCTCAGGTCTGGGACC
TGACCCTTTGCCTCTAGATACCGCGTGTACCGCGCAAGCCAAGGAATTGCCTGAGGAAGC
TTTGTTTCTTTAAAAGGTCAGCACAAAGGGCACAGGTAAGGTTTTCTTAGGGTAATTTCC
AAGCTGGACCTGTTACAGGGAGGTCGTGTGATTTTCTGAGCTGAGTTCAAGATCAGCTTA
TTAAGATCTGGCATCTTGAAACACCGGTCCTTTCCCCGCTCTGCACGGCGCCTGGGATTC
TGTTGGATCAGATGGCCCGACACCTGTCGTTGGGGGAGGGGAGGCGCGTCCGCTCCCGGC
CTTCCCTCGCGTGTCCGTCCTCGGTCCCTGCGACGCGGCCGCAACCCCACGTGGGCCCTG
TCTTGCCCCAGGTGAAGCTGTCTGCCTTTTCTCAGTCTGTACAGAAGAGTAGAGTTTTTG
TGGCAAAAGAGTGCAGACCTTGTATGCGAGTAAAATTTTGTATGAAGTAGTTGATCAAAT
TGTATCATAAAATTTATTTTTCTTTTATACATAAATCATTACAAATAATCACCTATTTTT
CTATAAGTGCATGGGTTGCAAGTTCGGTTCACACCTGGAAAAAGCATTTATAAGCGTTTG
GATTGTTTAAATGTTAAAGTGTGTGCGGTTTGTTTTTCACTGAAGCAAGTTCAGGGAACT
GTATCTTTTCATTCATATTGTGACAGCACTTTTCTGTATAAATGGAAGTTCCTTAGGGCA
GATAAGCATTTATCAGAAACTTTAAGATCGCTCATGAAGTTTTAGAAAGATTCTGCATGA
AGGTATTACTGTATCTTTTCAAAAATGAATTAAATTCCGATGTTATTTATTGTTTTGATA
AAATACACCAATGGGATTATCACATGTTTTCCTCTGGTCTGTAAGTTTTCAGAAAGTACT
GGATTCATACATCAGAAATTTTGACTTAAAGGGTGAGCTGATACTAATTTATATTTAAAG
GAAATGTGTCAACTTTTGAAAAAAGTAGTTTAAAACTAAAATTCAAGC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               164-1128, gnl|bosTau2|chr3 (84798083-84799067)
               

               
               164-1128, gnl|Hg17|chr2 (239090710-239092025)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               164-1128, gnl|bosTau2|chr3 (84798083-84799067)
               

               
               164-1128, gnl|Hg17|chr2 (239090710-239092025)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               pla (0.534688)
               

               
               fco (0.314416)
               

               
               che (0.272628)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.534688)
               

               
               fco (0.314416)
               

               
               che (0.272628)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	164-1128, gnl\|bosTau2\|chr3 (84798083-84799067)
	164-1128, gnl\|Hg17\|chr2 (239090710-239092025)

	pla (0.534688)
	fco (0.314416)
	che (0.272628)
	fcc (0.197785)
	mgm (0.180343)
	gul (0.177588)
	mcp (0.170648)
	cki (0.165235)
	lun (0.150489)
	spl (0.143184)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	eru (0.120048)
	ecc (0.115035)
	ldo (0.0970026)