Ss1.1-rpldo0103_b3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTCGCTTGTCTCACGCTTCGCAGTCGGCAGAGTCGCGGCCGCACCGGACCCGCCATTCG CTTGTCTCACGCTTCGCAGTCGGCAGAGTCGCGGCCGCACCGGGAAGGAGGAGGAGACCT CAGGCGAATTCTCTTCCTGCCGAGATGTCTATTGGTGTGCCGATTAAAGTCCTACATGAG GCTGAGGGGCACATTGTGACCTGTGAGACGAACACGGGAGAGGTGTACCGAGGGAAGCTC ATTGAAGCCGAGGACAACATGAACTGCCAGATGTCTAACATCACAGTCACATACAGAGAC GGCCGAGTGGCGCAGCTGGAGCAGGTGTATATCCGTGGCAGCAAGATCCGCTTTCTGATT CTGCCTGACATGCTGAAAAACGCACCCATGTTAAAGAGCATGAAAAATAAAAACCAAGGC TCAGGAGCCGGTCGGGGAAAAGCTGCTATTCTGAAGGCCCAAGTGGCTGCGAGAGGGAGA GGACGTGGAATGGGCCGTGGAAACATTTTCCAGAAGCGAAGATAAATTTATCTGTTGGAC AGAACTTTGCCCTCATGTTTTCTTTAGGTTATCTGGTTGTGAGGCAGGAAGGTGTGTGCT GGTGTATATGTCCTAGGTTATTTGGCATCTTTTTCTTTAGATCAGGGGAAATGCTACACT AAATAAATTTTTTTTTTTTCTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTCGCTTGTCTCACGCTTCGCAGTCGGCAGAGTCGCGGCCGCACCGGACCCGCCATTCG CTTGTCTCACGCTTCGCAGTCGGCAGAGTCGCGGCCGCACCGGGAAGGAGGAGGAGACCT CAGGCGAATTCTCTTCCTGCCGAGATGTCTATTGGTGTGCCGATTAAAGTCCTACATGAG GCTGAGGGGCACATTGTGACCTGTGAGACGAACACGGGAGAGGTGTACCGAGGGAAGCTC ATTGAAGCCGAGGACAACATGAACTGCCAGATGTCTAACATCACAGTCACATACAGAGAC GGCCGAGTGGCGCAGCTGGAGCAGGTGTATATCCGTGGCAGCAAGATCCGCTTTCTGATT CTGCCTGACATGCTGAAAAACGCACCCATGTTAAAGAGCATGAAAAATAAAAACCAAGGC TCAGGAGCCGGTCGGGGAAAAGCTGCTATTCTGAAGGCCCAAGTGGCTGCGAGAGGGAGA GGACGTGGAATGGGCCGTGGAAACATTTTCCAGAAGCGAAGATAAATTTATCTGTTGGAC AGAACTTTGCCCTCATGTTTTCTTTAGGTTATCTGGTTGTGAGGCAGGAAGGTGTGTGCT GGTGTATATGTCCTAGGTTATTTGGCATCTTTTTCTTTAGATCAGGGGAAATGCTACACT AAATAAATTTTTTTTTTTTCTTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 268-461, gnl|bosTau2|chr17 (44766123-44765930) | |
| 268-461, gnl|canFam2|chr26 (31326399-31326546) | |
| 268-461, gnl|danRer3|chr8 (23615270-23615427) | |
| 268-461, gnl|dasNov1|scaffold_21570 (12935-12819) | |
| 268-461, gnl|echTel1|scaffold_322212 (20762-20631) | |
| 268-461, gnl|fr1|chrUn (276227583-276227730) | |
| 268-461, gnl|galGal2|chr15 (8370193-8370046) | |
| 268-461, gnl|hg17|chr22 (23288484-23288631) | |
| 268-461, gnl|Hg17|chr22 (23288503-23288696) | |
| 268-461, gnl|mm7|chr10 (75187806-75187953) | |
| 268-461, gnl|Mm7|chr10 (75187825-75188018) | |
| 268-461, gnl|monDom2|scaffold_475 (45623-45758) | |
| 268-461, gnl|oryCun1|scaffold_202749 (11827-11683) | |
| 268-461, gnl|panTro1|chr23 (23355065-23355212) | |
| 268-461, gnl|rheMac2|chr10 (67983280-67983427) | |
| 268-461, gnl|rn3|chr1 (45129432-45129563) | |
| 268-461, gnl|tetNig1|chrUn_random (115048904-115048767) | |
| 268-461, gnl|xenTro1|scaffold_169 (611989-612124) | |
| 462-684, gnl|bosTau2|chr17 (44764530-44764314) | |
| 462-684, gnl|Hg17|chr22 (23292436-23292675) | |
| 462-684, gnl|Mm7|chr10 (75190910-75191153) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 268-461, gnl|bosTau2|chr17 (44766123-44765930) | |
| 268-461, gnl|canFam2|chr26 (31326399-31326546) | |
| 268-461, gnl|danRer3|chr8 (23615270-23615427) | |
| 268-461, gnl|dasNov1|scaffold_21570 (12935-12819) | |
| 268-461, gnl|echTel1|scaffold_322212 (20762-20631) | |
| 268-461, gnl|fr1|chrUn (276227583-276227730) | |
| 268-461, gnl|galGal2|chr15 (8370193-8370046) | |
| 268-461, gnl|hg17|chr22 (23288484-23288631) | |
| 268-461, gnl|Hg17|chr22 (23288503-23288696) | |
| 268-461, gnl|mm7|chr10 (75187806-75187953) | |
| 268-461, gnl|Mm7|chr10 (75187825-75188018) | |
| 268-461, gnl|monDom2|scaffold_475 (45623-45758) | |
| 268-461, gnl|oryCun1|scaffold_202749 (11827-11683) | |
| 268-461, gnl|panTro1|chr23 (23355065-23355212) | |
| 268-461, gnl|rheMac2|chr10 (67983280-67983427) | |
| 268-461, gnl|rn3|chr1 (45129432-45129563) | |
| 268-461, gnl|tetNig1|chrUn_random (115048904-115048767) | |
| 268-461, gnl|xenTro1|scaffold_169 (611989-612124) | |
| 462-684, gnl|bosTau2|chr17 (44764530-44764314) | |
| 462-684, gnl|Hg17|chr22 (23292436-23292675) | |
| 462-684, gnl|Mm7|chr10 (75190910-75191153) |
| Expressed library(ies): 63 entry(ies) | More info |
| Expressed library(ies): 63 entry(ies) | Help | Less info |
| cje (2.14805) | |
| thg (1.64828) | |
| cki (1.32188) | |
| isp (1.05263) | |
| spc (1.02029) | |
| cut (1.01954) | |
| che (0.817884) | |
| cbe (0.717703) | |
| fbs (0.701385) | |
| ova (0.645661) | |
| hea (0.613497) | |
| sme (0.610874) | |
| cst (0.560146) | |
| cmu (0.55918) | |
| ssp (0.542079) | |
| med (0.465008) | |
| mgp (0.461361) | |
| tes (0.415628) | |
| nbm (0.397298) | |
| jej (0.395687) | |
| elu (0.385356) | |
| mgm (0.360685) | |
| sto (0.359648) | |
| fty (0.351679) | |
| sin (0.349895) | |
| fco (0.314416) | |
| eje (0.296501) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| csk (0.281492) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| ese (0.253004) | |
| mas (0.210305) | |
| col (0.195008) | |
| gul (0.177588) | |
| ill (0.175593) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 63 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (2.14805) | |
| thg (1.64828) | |
| cki (1.32188) | |
| isp (1.05263) | |
| spc (1.02029) | |
| cut (1.01954) | |
| che (0.817884) | |
| cbe (0.717703) | |
| fbs (0.701385) | |
| ova (0.645661) | |
| hea (0.613497) | |
| sme (0.610874) | |
| cst (0.560146) | |
| cmu (0.55918) | |
| ssp (0.542079) | |
| med (0.465008) | |
| mgp (0.461361) | |
| tes (0.415628) | |
| nbm (0.397298) | |
| jej (0.395687) | |
| elu (0.385356) | |
| mgm (0.360685) | |
| sto (0.359648) | |
| fty (0.351679) | |
| sin (0.349895) | |
| fco (0.314416) | |
| eje (0.296501) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| csk (0.281492) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| ese (0.253004) | |
| mas (0.210305) | |
| col (0.195008) | |
| gul (0.177588) | |
| ill (0.175593) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) |