Ss1.1-rpldo0103_g5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATTCCCATCTTCTAACCTTGACAGATTCTGTCTATTCTGTTGAAATGCCCCCTCCTTT TTGTACTTACTGTCATCCTAGTTCAGGTTCTTTGTTTCTTCCACTTGATGACAGCAATAG TTTTCTTAGCCATGATAACATCAATCTTTTGGGAAAGGTTGAGCTGTTGGATTATCTTGA CAGTATTGATTGCAGTTTAGAGGACTTCCAAGCCATGCTCTCAGGAAGACAGTTTAGCAT AGACCCAGATCTCCTGGTTGATCTTTTCACTAGTTCTGTGCAGATGAACCCCACAGATTA CATCAATAATACAAAATCTGAAAATAAAGGATTAGAAACTACCAAGAGCAGTGTAGTTCA ACCAGTTTCAGAAGAGGGAAGAAAATCTAAACCCAAAACAGATAAGCAGCTTATCCAGTA CACTGCCTTTCCACTTCTTGCATTCCTTGATGGGAACCCTGCATCTGCTGTTGAACAGGG GAATACGGCATCATCAGAAGTTATGTCCTCTGTAGATAAACCTATAGAAGTTGATGAGCT TCTAGATAGCAGCCTGGACCCAGAACCAACCCAGAGTAAGCTTGTTCGCCTGGAGCCATT GACTGAAGCTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATTCCCATCTTCTAACCTTGACAGATTCTGTCTATTCTGTTGAAATGCCCCCTCCTTT TTGTACTTACTGTCATCCTAGTTCAGGTTCTTTGTTTCTTCCACTTGATGACAGCAATAG TTTTCTTAGCCATGATAACATCAATCTTTTGGGAAAGGTTGAGCTGTTGGATTATCTTGA CAGTATTGATTGCAGTTTAGAGGACTTCCAAGCCATGCTCTCAGGAAGACAGTTTAGCAT AGACCCAGATCTCCTGGTTGATCTTTTCACTAGTTCTGTGCAGATGAACCCCACAGATTA CATCAATAATACAAAATCTGAAAATAAAGGATTAGAAACTACCAAGAGCAGTGTAGTTCA ACCAGTTTCAGAAGAGGGAAGAAAATCTAAACCCAAAACAGATAAGCAGCTTATCCAGTA CACTGCCTTTCCACTTCTTGCATTCCTTGATGGGAACCCTGCATCTGCTGTTGAACAGGG GAATACGGCATCATCAGAAGTTATGTCCTCTGTAGATAAACCTATAGAAGTTGATGAGCT TCTAGATAGCAGCCTGGACCCAGAACCAACCCAGAGTAAGCTTGTTCGCCTGGAGCCATT GACTGAAGCTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 157-262, + strand, RNAz p=0.664396 | |
| 157-261, + strand, RNAz p=0.534977 | |
| 439-555, + strand, RNAz p=0.72751 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 157-262, + strand, RNAz p=0.664396 | |
| 157-261, + strand, RNAz p=0.534977 | |
| 439-555, + strand, RNAz p=0.72751 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 2-142, gnl|bosTau2|chr9 (14773912-14773766) | |
| 2-142, gnl|Hg17|chr6 (122793968-122794116) | |
| 157-262, gnl|bosTau2|chr9 (14781225-14781120) | |
| 157-262, gnl|canFam2|chr1 (64855858-64855976) | |
| 157-262, gnl|danRer3|chr20 (47013285-47013170) | |
| 157-262, gnl|dasNov1|scaffold_80421 (1598-1704) | |
| 157-262, gnl|echTel1|scaffold_312484 (86380-86498) | |
| 157-262, gnl|galGal2|chr3 (59791064-59790950) | |
| 157-262, gnl|hg17|chr6 (122786420-122786538) | |
| 157-262, gnl|Hg17|chr6 (122786425-122786530) | |
| 157-262, gnl|loxAfr1|scaffold_24377 (4718-4836) | |
| 157-262, gnl|mm7|chr10 (57324048-57324166) | |
| 157-262, gnl|Mm7|chr10 (57324053-57324158) | |
| 157-262, gnl|monDom2|scaffold_0 (92690399-92690281) | |
| 157-262, gnl|oryCun1|scaffold_186015 (7351-7233) | |
| 157-262, gnl|panTro1|chr5 (125303570-125303688) | |
| 157-262, gnl|rheMac2|chr4 (141510997-141510879) | |
| 157-262, gnl|rn3|chr20 (36544291-36544409) | |
| 157-262, gnl|xenTro1|scaffold_259 (1170727-1170852) | |
| 400-612, gnl|bosTau2|chr9 (14773056-14772844) | |
| 400-612, gnl|canFam2|chr1 (64863671-64863538) | |
| 400-612, gnl|canFam2|chr1 (64863535-64863906) | |
| 400-612, gnl|danRer3|chr20 (47011190-47010828) | |
| 400-612, gnl|dasNov1|scaffold_37479 (7018-6913) | |
| 400-612, gnl|dasNov1|scaffold_37479 (6910-7251) | |
| 400-612, gnl|echTel1|scaffold_312484 (94369-94233) | |
| 400-612, gnl|echTel1|scaffold_312484 (94230-94603) | |
| 400-612, gnl|galGal2|chr3 (59780274-59780380) | |
| 400-612, gnl|galGal2|chr3 (59778553-59778198) | |
| 400-612, gnl|hg17|chr12 (53802718-53802854) | |
| 400-612, gnl|hg17|chr6 (122794767-122795141) | |
| 400-612, gnl|Hg17|chr6 (122794767-122794982) | |
| 400-612, gnl|loxAfr1|scaffold_24377 (12440-12307) | |
| 400-612, gnl|loxAfr1|scaffold_24377 (12304-12675) | |
| 400-612, gnl|mm7|chr10 (57329894-57329763) | |
| 400-612, gnl|mm7|chr10 (57329757-57330124) | |
| 400-612, gnl|Mm7|chr10 (57329757-57329972) | |
| 400-612, gnl|monDom2|scaffold_0 (92677567-92677201) | |
| 400-612, gnl|panTro1|chr10 (55073141-55073278) | |
| 400-612, gnl|panTro1|chr5 (125311904-125312278) | |
| 400-612, gnl|rheMac2|chr11 (52213324-52213461) | |
| 400-612, gnl|rheMac2|chr4 (141502681-141502307) | |
| 400-612, gnl|rn3|chr20 (36551300-36551166) | |
| 400-612, gnl|rn3|chr20 (36551163-36551528) | |
| 400-612, gnl|xenTro1|scaffold_259 (1176232-1176569) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-142, gnl|bosTau2|chr9 (14773912-14773766) | |
| 2-142, gnl|Hg17|chr6 (122793968-122794116) | |
| 157-262, gnl|bosTau2|chr9 (14781225-14781120) | |
| 157-262, gnl|canFam2|chr1 (64855858-64855976) | |
| 157-262, gnl|danRer3|chr20 (47013285-47013170) | |
| 157-262, gnl|dasNov1|scaffold_80421 (1598-1704) | |
| 157-262, gnl|echTel1|scaffold_312484 (86380-86498) | |
| 157-262, gnl|galGal2|chr3 (59791064-59790950) | |
| 157-262, gnl|hg17|chr6 (122786420-122786538) | |
| 157-262, gnl|Hg17|chr6 (122786425-122786530) | |
| 157-262, gnl|loxAfr1|scaffold_24377 (4718-4836) | |
| 157-262, gnl|mm7|chr10 (57324048-57324166) | |
| 157-262, gnl|Mm7|chr10 (57324053-57324158) | |
| 157-262, gnl|monDom2|scaffold_0 (92690399-92690281) | |
| 157-262, gnl|oryCun1|scaffold_186015 (7351-7233) | |
| 157-262, gnl|panTro1|chr5 (125303570-125303688) | |
| 157-262, gnl|rheMac2|chr4 (141510997-141510879) | |
| 157-262, gnl|rn3|chr20 (36544291-36544409) | |
| 157-262, gnl|xenTro1|scaffold_259 (1170727-1170852) | |
| 400-612, gnl|bosTau2|chr9 (14773056-14772844) | |
| 400-612, gnl|canFam2|chr1 (64863671-64863538) | |
| 400-612, gnl|canFam2|chr1 (64863535-64863906) | |
| 400-612, gnl|danRer3|chr20 (47011190-47010828) | |
| 400-612, gnl|dasNov1|scaffold_37479 (7018-6913) | |
| 400-612, gnl|dasNov1|scaffold_37479 (6910-7251) | |
| 400-612, gnl|echTel1|scaffold_312484 (94369-94233) | |
| 400-612, gnl|echTel1|scaffold_312484 (94230-94603) | |
| 400-612, gnl|galGal2|chr3 (59780274-59780380) | |
| 400-612, gnl|galGal2|chr3 (59778553-59778198) | |
| 400-612, gnl|hg17|chr12 (53802718-53802854) | |
| 400-612, gnl|hg17|chr6 (122794767-122795141) | |
| 400-612, gnl|Hg17|chr6 (122794767-122794982) | |
| 400-612, gnl|loxAfr1|scaffold_24377 (12440-12307) | |
| 400-612, gnl|loxAfr1|scaffold_24377 (12304-12675) | |
| 400-612, gnl|mm7|chr10 (57329894-57329763) | |
| 400-612, gnl|mm7|chr10 (57329757-57330124) | |
| 400-612, gnl|Mm7|chr10 (57329757-57329972) | |
| 400-612, gnl|monDom2|scaffold_0 (92677567-92677201) | |
| 400-612, gnl|panTro1|chr10 (55073141-55073278) | |
| 400-612, gnl|panTro1|chr5 (125311904-125312278) | |
| 400-612, gnl|rheMac2|chr11 (52213324-52213461) | |
| 400-612, gnl|rheMac2|chr4 (141502681-141502307) | |
| 400-612, gnl|rn3|chr20 (36551300-36551166) | |
| 400-612, gnl|rn3|chr20 (36551163-36551528) | |
| 400-612, gnl|xenTro1|scaffold_259 (1176232-1176569) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| jej (0.0989218) | |
| ldo (0.0970026) |