Non-Coding RNA Search

Ss1.1-rpldo0103_o7.5

Sequence:


               
               TTCCTGTTCTGCAAGTTAACCTAGTCTTTCCATCAAACTCTTTCCATAATTTGTCTTGAC
CTTATGGTATGGTTTAAAAAAAAA------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------AAGCAAAAAAATAAAAAATAAAATTAAAAATCACAA
TTTTAAGTTTTCTGTCCTTTTATCCTTTGAAATATCTGAGGGGGTGGTAAAATCCTTCAG
ATTTTACCTAGAAGCAGCATAAAAATCCACTGTTAGATTGTTCACCTCACTTTTGAGTTC
AGAACATAGTATCAGCTACCCATGGCCTTTCAACCATTGTAGTCCTTAGGATGTTTCTGT
GTCTTGATATGGAAATGTTTCCTAGTATATTTTACTTATTCTTTCTCTTGACTTTTTTTT
CTCTTAACAGATATGGAGGCTAATCACCAATTTTTTATTTTTTGGGCCAGTTGGATTCAA
TTTTTTATTTAATATGATTTTTCTGTATCCTTTTCTAAGTGGGCTTAGCATAAAAACTTT
AGGTTTACTTAGGAAATACAATATTAATTTGAAGCTATAACCCTGTTAATTTTGTTACCA
TCTTAGTTATAACTTCCTGGGGGTACTGGCTCAGTGATCCACAGAATAATTGGCCAGATA
GTAATGTTTTGAGGGTGTTTGTAGGTCACTGTTTATTCAAGTGGGAGGTATTTAACCATA
AAACATTTACGTTTCTGCCCATAAGCCACTTGCAAATCTGATCAGGGGAGAGCAGAAGTG
ATTTGAGCCGTACTTAAAAAGTAACACCAGCAGGTACCAAGTGATAAAACACAGCCTGGG
AATGGGTTCATGGGGGATGGAGAACATGAGATCTCCTTGGATCTCGGTTGCTGGTTCTGC
TGGCTGAAAAGGCAGTGTCTGTTGGGCTCGCCATGTTCCAGTTTGTTGCAAGAAGGGAAG
AGTTGTGCTCTGGTCAGATGTGATTGGGGCCGCTGAGCAGTGCATTTCTCCTGTACCCCG
ACCCTCCAGATTAAGAGGGGAGTTGGAGCTCAGCTCATTGGCAGTAGACAGAGGGCCTTG
TAGGGTGACAGGCTTCCTGGCCTAGGATGGATTCCTGTGTCTTCTCTATGGTATATCATT
CTGGTAAGTTTTTTATTAAATGTTTTCATTGTCATGCCACCTTATTGACTGAGGTATGGA
AATGCTTATCCACTTGGCCTGAAAAAGGGGATTATTACATGAGCCTCCTTGATAGGCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTGTTCTGCAAGTTAACCTAGTCTTTCCATCAAACTCTTTCCATAATTTGTCTTGAC
CTTATGGTATGGTTTAAAAAAAAA------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------AAGCAAAAAAATAAAAAATAAAATTAAAAATCACAA
TTTTAAGTTTTCTGTCCTTTTATCCTTTGAAATATCTGAGGGGGTGGTAAAATCCTTCAG
ATTTTACCTAGAAGCAGCATAAAAATCCACTGTTAGATTGTTCACCTCACTTTTGAGTTC
AGAACATAGTATCAGCTACCCATGGCCTTTCAACCATTGTAGTCCTTAGGATGTTTCTGT
GTCTTGATATGGAAATGTTTCCTAGTATATTTTACTTATTCTTTCTCTTGACTTTTTTTT
CTCTTAACAGATATGGAGGCTAATCACCAATTTTTTATTTTTTGGGCCAGTTGGATTCAA
TTTTTTATTTAATATGATTTTTCTGTATCCTTTTCTAAGTGGGCTTAGCATAAAAACTTT
AGGTTTACTTAGGAAATACAATATTAATTTGAAGCTATAACCCTGTTAATTTTGTTACCA
TCTTAGTTATAACTTCCTGGGGGTACTGGCTCAGTGATCCACAGAATAATTGGCCAGATA
GTAATGTTTTGAGGGTGTTTGTAGGTCACTGTTTATTCAAGTGGGAGGTATTTAACCATA
AAACATTTACGTTTCTGCCCATAAGCCACTTGCAAATCTGATCAGGGGAGAGCAGAAGTG
ATTTGAGCCGTACTTAAAAAGTAACACCAGCAGGTACCAAGTGATAAAACACAGCCTGGG
AATGGGTTCATGGGGGATGGAGAACATGAGATCTCCTTGGATCTCGGTTGCTGGTTCTGC
TGGCTGAAAAGGCAGTGTCTGTTGGGCTCGCCATGTTCCAGTTTGTTGCAAGAAGGGAAG
AGTTGTGCTCTGGTCAGATGTGATTGGGGCCGCTGAGCAGTGCATTTCTCCTGTACCCCG
ACCCTCCAGATTAAGAGGGGAGTTGGAGCTCAGCTCATTGGCAGTAGACAGAGGGCCTTG
TAGGGTGACAGGCTTCCTGGCCTAGGATGGATTCCTGTGTCTTCTCTATGGTATATCATT
CTGGTAAGTTTTTTATTAAATGTTTTCATTGTCATGCCACCTTATTGACTGAGGTATGGA
AATGCTTATCCACTTGGCCTGAAAAAGGGGATTATTACATGAGCCTCCTTGATAGGCATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               113-1200, gnl|bosTau2|chr19 (18581685-18580609)
               

               
               113-1200, gnl|Hg17|chr17 (5327185-5326095)
               

               
               113-1200, gnl|Mm7|chr11 (71097671-71096568)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-1200, gnl|bosTau2|chr19 (18581685-18580609)
               

               
               113-1200, gnl|Hg17|chr17 (5327185-5326095)
               

               
               113-1200, gnl|Mm7|chr11 (71097671-71096568)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	113-1200, gnl\|bosTau2\|chr19 (18581685-18580609)
	113-1200, gnl\|Hg17\|chr17 (5327185-5326095)
	113-1200, gnl\|Mm7\|chr11 (71097671-71096568)