Non-Coding RNA Search

Ss1.1-rpldo0104_a16.5.125

Sequence:


               
               GGGACGTCCGGCCTGCGAGTGGTGGCTTGTCTGTTGAGCTCGGCGAAAGAACGATTTTAA
AATGGGTGATGTTGAGAAGGGCAAGAAGATTTTTGTTCAGAAGTGTGCCCAGTGCCACAC
TGTAGAAAAGGGAGGCAAGCACAAGACTGGTCCAAACCTCCATGGTCTCTTTGGGCGGAA
GACAGGTCAGGCTCCTGGATTCTCTTACACAGATGCCAACAAGAACAAAGGCATCACCTG
GGGAGAGGAGACACTGATGGAGTACCTGGAGAATCCCAAGAAGTACATCCCTGGAACAAA
AATGATCTTCGCTGGCATTAAGAAGAAGGGAGAAAGGGAAGACTTGATAGCTTATCTGAA
AAAAGCTACTAATGAGTAAAAGTTGGCCACCGCCTTATTTATTACAAGACCGACATGTCT
CATGACTTTTATATGTGTACCATATTTAAATTGATCTCATACTCTAGAATTCAGATCATG
TATGGCTGATGGAATGTTTCTGTTGGATGGTCCTGATTTAAATAAGATTGGTTGGTGGCT
AAATGAATATGGTCAGCTGTTTGAATTTTAATATTAATTCTAGTTCAACAAGTACTATCA
CTGTCTTTCCCTTCTACAGAGATGGTTAAACTTGAATGTGGAGTGTTAAACTTTTCAGGA
AAATGGTGAATACCTTCTCAGAACCTATAGGAGATTGGTTTTATATTTAGATTTCTATAA
CTGGTTATATTAATATATTTAAATACTGAGAAGATCCCTTCACTGTCTCATAGAACAGAG
CAAGATTCACCTGTGTTTCAAGTTGTGTTCACTAGCCTGTTAAGGCATGAGCCAATGGTA
AACTGACAGTGTCCCCTTTATCTTTTTGGTCTTAACTATGCCAATTTCATTAGAATTACC
TGTATCGAAAATACTGCCTTTTACTTACTGAAAGGTATTTTAGCGAGGTTTATGTACAGC
ATCAAGTAAAGAGTATTTAGCATTTCTCACATTTTATAGATGATCTTTAAGATCAGAGGC
TTTTAAAATTCAGTGTGACGAGATATGTTAGCAGACTTTGCAGGTGAATTCTTACAAGGT
CAGGCTGTTAGAATGCAGGATTGTCTTTTAAATAGGTAGTCAGAAACACAACTGTAGAAC
TACCGGATGTGTGTGATTGATAATGGTGCTTTTGCCAACTCATGGAAGGCTTAAAGTAGG
GGAGCTGTACCGTCAGCACAGATCTGTAAATTATCTGGTCATAAAGCTTAAGAATTAAAA
ACAAAATCGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACGTCCGGCCTGCGAGTGGTGGCTTGTCTGTTGAGCTCGGCGAAAGAACGATTTTAA
AATGGGTGATGTTGAGAAGGGCAAGAAGATTTTTGTTCAGAAGTGTGCCCAGTGCCACAC
TGTAGAAAAGGGAGGCAAGCACAAGACTGGTCCAAACCTCCATGGTCTCTTTGGGCGGAA
GACAGGTCAGGCTCCTGGATTCTCTTACACAGATGCCAACAAGAACAAAGGCATCACCTG
GGGAGAGGAGACACTGATGGAGTACCTGGAGAATCCCAAGAAGTACATCCCTGGAACAAA
AATGATCTTCGCTGGCATTAAGAAGAAGGGAGAAAGGGAAGACTTGATAGCTTATCTGAA
AAAAGCTACTAATGAGTAAAAGTTGGCCACCGCCTTATTTATTACAAGACCGACATGTCT
CATGACTTTTATATGTGTACCATATTTAAATTGATCTCATACTCTAGAATTCAGATCATG
TATGGCTGATGGAATGTTTCTGTTGGATGGTCCTGATTTAAATAAGATTGGTTGGTGGCT
AAATGAATATGGTCAGCTGTTTGAATTTTAATATTAATTCTAGTTCAACAAGTACTATCA
CTGTCTTTCCCTTCTACAGAGATGGTTAAACTTGAATGTGGAGTGTTAAACTTTTCAGGA
AAATGGTGAATACCTTCTCAGAACCTATAGGAGATTGGTTTTATATTTAGATTTCTATAA
CTGGTTATATTAATATATTTAAATACTGAGAAGATCCCTTCACTGTCTCATAGAACAGAG
CAAGATTCACCTGTGTTTCAAGTTGTGTTCACTAGCCTGTTAAGGCATGAGCCAATGGTA
AACTGACAGTGTCCCCTTTATCTTTTTGGTCTTAACTATGCCAATTTCATTAGAATTACC
TGTATCGAAAATACTGCCTTTTACTTACTGAAAGGTATTTTAGCGAGGTTTATGTACAGC
ATCAAGTAAAGAGTATTTAGCATTTCTCACATTTTATAGATGATCTTTAAGATCAGAGGC
TTTTAAAATTCAGTGTGACGAGATATGTTAGCAGACTTTGCAGGTGAATTCTTACAAGGT
CAGGCTGTTAGAATGCAGGATTGTCTTTTAAATAGGTAGTCAGAAACACAACTGTAGAAC
TACCGGATGTGTGTGATTGATAATGGTGCTTTTGCCAACTCATGGAAGGCTTAAAGTAGG
GGAGCTGTACCGTCAGCACAGATCTGTAAATTATCTGGTCATAAAGCTTAAGAATTAAAA
ACAAAATCGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62208258|gb|AAX77008.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62208258|gb|AAX77008.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-279, + strand, RNAz p=0.579184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, + strand, RNAz p=0.579184

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-911, gnl|bosTau2|chr11 (79491689-79490783)
               

               
               1-911, gnl|Hg17|chr1 (147689384-147690278)
               

               
               1-911, gnl|Mm7|chr2 (90655352-90654488)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-911, gnl|bosTau2|chr11 (79491689-79490783)
               

               
               1-911, gnl|Hg17|chr1 (147689384-147690278)
               

               
               1-911, gnl|Mm7|chr2 (90655352-90654488)

Expressed library(ies): 56 entry(ies)

More info

Expressed library(ies): 56 entry(ies)

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               vin (4.6558)
               

               
               cbe (4.06699)
               

               
               isp (3.45865)
               

               
               tbr (2.46685)
               

               
               lin (2.32964)
               

               
               hea (2.24949)
               

               
               bfe (2.24786)
               

               
               fco (1.8865)
               

               
               ssp (1.62624)
               

               
               ret (1.28733)
               

               
               ste (0.946458)
               

               
               lyg (0.931718)
               

               
               mgp (0.922722)
               

               
               mas (0.84122)
               

               
               hlv (0.835538)
               

               
               kid (0.778412)
               

               
               ova (0.774793)
               

               
               rec (0.692281)
               

               
               pla (0.66836)
               

               
               sme (0.610874)
               

               
               ldo (0.582016)
               

               
               nep (0.551775)
               

               
               sag (0.548145)
               

               
               sug (0.509165)
               

               
               ece (0.45861)
               

               
               liv (0.438853)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               lun (0.300978)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (4.6558)
               

               
               cbe (4.06699)
               

               
               isp (3.45865)
               

               
               tbr (2.46685)
               

               
               lin (2.32964)
               

               
               hea (2.24949)
               

               
               bfe (2.24786)
               

               
               fco (1.8865)
               

               
               ssp (1.62624)
               

               
               ret (1.28733)
               

               
               ste (0.946458)
               

               
               lyg (0.931718)
               

               
               mgp (0.922722)
               

               
               mas (0.84122)
               

               
               hlv (0.835538)
               

               
               kid (0.778412)
               

               
               ova (0.774793)
               

               
               rec (0.692281)
               

               
               pla (0.66836)
               

               
               sme (0.610874)
               

               
               ldo (0.582016)
               

               
               nep (0.551775)
               

               
               sag (0.548145)
               

               
               sug (0.509165)
               

               
               ece (0.45861)
               

               
               liv (0.438853)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               lun (0.300978)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	1-911, gnl\|bosTau2\|chr11 (79491689-79490783)
	1-911, gnl\|Hg17\|chr1 (147689384-147690278)
	1-911, gnl\|Mm7\|chr2 (90655352-90654488)

	vin (4.6558)
	cbe (4.06699)
	isp (3.45865)
	tbr (2.46685)
	lin (2.32964)
	hea (2.24949)
	bfe (2.24786)
	fco (1.8865)
	ssp (1.62624)
	ret (1.28733)
	ste (0.946458)
	lyg (0.931718)
	mgp (0.922722)
	mas (0.84122)
	hlv (0.835538)
	kid (0.778412)
	ova (0.774793)
	rec (0.692281)
	pla (0.66836)
	sme (0.610874)
	ldo (0.582016)
	nep (0.551775)
	sag (0.548145)
	sug (0.509165)
	ece (0.45861)
	liv (0.438853)
	nms (0.427716)
	amn (0.417711)
	fcc (0.39557)
	col (0.390016)
	elu (0.385356)
	thg (0.380373)
	sin (0.349895)
	spc (0.340097)
	lun (0.300978)
	nca (0.273748)
	ese (0.253004)
	bla (0.248694)
	tra (0.246184)
	med (0.232504)
	tes (0.207814)
	nlu (0.191681)
	cmu (0.186393)
	gul (0.177588)
	fty (0.17584)
	ton (0.1755)
	duo (0.172801)
	fhi (0.169578)
	nco (0.161734)
	mga (0.160205)
	fat (0.147427)
	spl (0.143184)
	lnt (0.142308)
	csk (0.140746)
	ebs (0.118301)
	cty (0.10408)