Ss1.1-rpldo0104_a16.5.125
|
GGGACGTCCGGCCTGCGAGTGGTGGCTTGTCTGTTGAGCTCGGCGAAAGAACGATTTTAA
AATGGGTGATGTTGAGAAGGGCAAGAAGATTTTTGTTCAGAAGTGTGCCCAGTGCCACAC
TGTAGAAAAGGGAGGCAAGCACAAGACTGGTCCAAACCTCCATGGTCTCTTTGGGCGGAA
GACAGGTCAGGCTCCTGGATTCTCTTACACAGATGCCAACAAGAACAAAGGCATCACCTG
GGGAGAGGAGACACTGATGGAGTACCTGGAGAATCCCAAGAAGTACATCCCTGGAACAAA
AATGATCTTCGCTGGCATTAAGAAGAAGGGAGAAAGGGAAGACTTGATAGCTTATCTGAA
AAAAGCTACTAATGAGTAAAAGTTGGCCACCGCCTTATTTATTACAAGACCGACATGTCT
CATGACTTTTATATGTGTACCATATTTAAATTGATCTCATACTCTAGAATTCAGATCATG
TATGGCTGATGGAATGTTTCTGTTGGATGGTCCTGATTTAAATAAGATTGGTTGGTGGCT
AAATGAATATGGTCAGCTGTTTGAATTTTAATATTAATTCTAGTTCAACAAGTACTATCA
CTGTCTTTCCCTTCTACAGAGATGGTTAAACTTGAATGTGGAGTGTTAAACTTTTCAGGA
AAATGGTGAATACCTTCTCAGAACCTATAGGAGATTGGTTTTATATTTAGATTTCTATAA
CTGGTTATATTAATATATTTAAATACTGAGAAGATCCCTTCACTGTCTCATAGAACAGAG
CAAGATTCACCTGTGTTTCAAGTTGTGTTCACTAGCCTGTTAAGGCATGAGCCAATGGTA
AACTGACAGTGTCCCCTTTATCTTTTTGGTCTTAACTATGCCAATTTCATTAGAATTACC
TGTATCGAAAATACTGCCTTTTACTTACTGAAAGGTATTTTAGCGAGGTTTATGTACAGC
ATCAAGTAAAGAGTATTTAGCATTTCTCACATTTTATAGATGATCTTTAAGATCAGAGGC
TTTTAAAATTCAGTGTGACGAGATATGTTAGCAGACTTTGCAGGTGAATTCTTACAAGGT
CAGGCTGTTAGAATGCAGGATTGTCTTTTAAATAGGTAGTCAGAAACACAACTGTAGAAC
TACCGGATGTGTGTGATTGATAATGGTGCTTTTGCCAACTCATGGAAGGCTTAAAGTAGG
GGAGCTGTACCGTCAGCACAGATCTGTAAATTATCTGGTCATAAAGCTTAAGAATTAAAA
ACAAAATCGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGACGTCCGGCCTGCGAGTGGTGGCTTGTCTGTTGAGCTCGGCGAAAGAACGATTTTAA
AATGGGTGATGTTGAGAAGGGCAAGAAGATTTTTGTTCAGAAGTGTGCCCAGTGCCACAC
TGTAGAAAAGGGAGGCAAGCACAAGACTGGTCCAAACCTCCATGGTCTCTTTGGGCGGAA
GACAGGTCAGGCTCCTGGATTCTCTTACACAGATGCCAACAAGAACAAAGGCATCACCTG
GGGAGAGGAGACACTGATGGAGTACCTGGAGAATCCCAAGAAGTACATCCCTGGAACAAA
AATGATCTTCGCTGGCATTAAGAAGAAGGGAGAAAGGGAAGACTTGATAGCTTATCTGAA
AAAAGCTACTAATGAGTAAAAGTTGGCCACCGCCTTATTTATTACAAGACCGACATGTCT
CATGACTTTTATATGTGTACCATATTTAAATTGATCTCATACTCTAGAATTCAGATCATG
TATGGCTGATGGAATGTTTCTGTTGGATGGTCCTGATTTAAATAAGATTGGTTGGTGGCT
AAATGAATATGGTCAGCTGTTTGAATTTTAATATTAATTCTAGTTCAACAAGTACTATCA
CTGTCTTTCCCTTCTACAGAGATGGTTAAACTTGAATGTGGAGTGTTAAACTTTTCAGGA
AAATGGTGAATACCTTCTCAGAACCTATAGGAGATTGGTTTTATATTTAGATTTCTATAA
CTGGTTATATTAATATATTTAAATACTGAGAAGATCCCTTCACTGTCTCATAGAACAGAG
CAAGATTCACCTGTGTTTCAAGTTGTGTTCACTAGCCTGTTAAGGCATGAGCCAATGGTA
AACTGACAGTGTCCCCTTTATCTTTTTGGTCTTAACTATGCCAATTTCATTAGAATTACC
TGTATCGAAAATACTGCCTTTTACTTACTGAAAGGTATTTTAGCGAGGTTTATGTACAGC
ATCAAGTAAAGAGTATTTAGCATTTCTCACATTTTATAGATGATCTTTAAGATCAGAGGC
TTTTAAAATTCAGTGTGACGAGATATGTTAGCAGACTTTGCAGGTGAATTCTTACAAGGT
CAGGCTGTTAGAATGCAGGATTGTCTTTTAAATAGGTAGTCAGAAACACAACTGTAGAAC
TACCGGATGTGTGTGATTGATAATGGTGCTTTTGCCAACTCATGGAAGGCTTAAAGTAGG
GGAGCTGTACCGTCAGCACAGATCTGTAAATTATCTGGTCATAAAGCTTAAGAATTAAAA
ACAAAATCGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|62208258|gb|AAX77008.1| |
Protein identifier
|
gi|62208258|gb|AAX77008.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
vin (4.6558) |
|
cbe (4.06699) |
|
isp (3.45865) |
|
tbr (2.46685) |
|
lin (2.32964) |
|
hea (2.24949) |
|
bfe (2.24786) |
|
fco (1.8865) |
|
ssp (1.62624) |
|
ret (1.28733) |
|
ste (0.946458) |
|
lyg (0.931718) |
|
mgp (0.922722) |
|
mas (0.84122) |
|
hlv (0.835538) |
|
kid (0.778412) |
|
ova (0.774793) |
|
rec (0.692281) |
|
pla (0.66836) |
|
sme (0.610874) |
|
ldo (0.582016) |
|
nep (0.551775) |
|
sag (0.548145) |
|
sug (0.509165) |
|
ece (0.45861) |
|
liv (0.438853) |
|
nms (0.427716) |
|
amn (0.417711) |
|
fcc (0.39557) |
|
col (0.390016) |
|
elu (0.385356) |
|
thg (0.380373) |
|
sin (0.349895) |
|
spc (0.340097) |
|
lun (0.300978) |
|
nca (0.273748) |
|
ese (0.253004) |
|
bla (0.248694) |
|
tra (0.246184) |
|
med (0.232504) |
|
tes (0.207814) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ton (0.1755) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
mga (0.160205) |
|
fat (0.147427) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
vin (4.6558) |
|
cbe (4.06699) |
|
isp (3.45865) |
|
tbr (2.46685) |
|
lin (2.32964) |
|
hea (2.24949) |
|
bfe (2.24786) |
|
fco (1.8865) |
|
ssp (1.62624) |
|
ret (1.28733) |
|
ste (0.946458) |
|
lyg (0.931718) |
|
mgp (0.922722) |
|
mas (0.84122) |
|
hlv (0.835538) |
|
kid (0.778412) |
|
ova (0.774793) |
|
rec (0.692281) |
|
pla (0.66836) |
|
sme (0.610874) |
|
ldo (0.582016) |
|
nep (0.551775) |
|
sag (0.548145) |
|
sug (0.509165) |
|
ece (0.45861) |
|
liv (0.438853) |
|
nms (0.427716) |
|
amn (0.417711) |
|
fcc (0.39557) |
|
col (0.390016) |
|
elu (0.385356) |
|
thg (0.380373) |
|
sin (0.349895) |
|
spc (0.340097) |
|
lun (0.300978) |
|
nca (0.273748) |
|
ese (0.253004) |
|
bla (0.248694) |
|
tra (0.246184) |
|
med (0.232504) |
|
tes (0.207814) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ton (0.1755) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
mga (0.160205) |
|
fat (0.147427) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
ebs (0.118301) |
|
cty (0.10408) |