Non-Coding RNA Search

Ss1.1-rpldo0104_l15.5

Sequence:


               
               CTAAAAATTCAGAAGGTGAGCTTTCTAGGGTCAAATTTATGTCCAATTCCAACAAAATAA
CAACATTTAGTAAGAAACCAAAAAGAAGAAAATACGATGAAAGTTACTTGTCTTTTGGAT
TTACTTACTTTGGAAATAGAGATGCACCTCATGCTCAGTGTGTGTTATGTAAGAAAATTT
TATCAAATAGCTCTTGGGCCCCTAGTAAGCTTCGAAGACATTTAGAAACCAAACATGCTG
CATATAAAGACAAAGACATAAGTTTTTTCAAGCAACATCTTGATTCACCTGAAAATAATA
AACCCCCAACACCTAAAATTGTCAACACAGACAATGAAAGTGCTACAGAAGCATCATACA
ATGTAAGTTACCATATAGCTCTGAGTGGAGAGGCTCATACTATTGGAGAGTTGCTTATCA
AGCCTTGTGCAAAAGATGTTGTGATGCGGATGTTTGACGAACAGTATAGTAAAAAAATAG
ATGCAGTACAACTATCAAACAGTACCGTTGCACGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAAAATTCAGAAGGTGAGCTTTCTAGGGTCAAATTTATGTCCAATTCCAACAAAATAA
CAACATTTAGTAAGAAACCAAAAAGAAGAAAATACGATGAAAGTTACTTGTCTTTTGGAT
TTACTTACTTTGGAAATAGAGATGCACCTCATGCTCAGTGTGTGTTATGTAAGAAAATTT
TATCAAATAGCTCTTGGGCCCCTAGTAAGCTTCGAAGACATTTAGAAACCAAACATGCTG
CATATAAAGACAAAGACATAAGTTTTTTCAAGCAACATCTTGATTCACCTGAAAATAATA
AACCCCCAACACCTAAAATTGTCAACACAGACAATGAAAGTGCTACAGAAGCATCATACA
ATGTAAGTTACCATATAGCTCTGAGTGGAGAGGCTCATACTATTGGAGAGTTGCTTATCA
AGCCTTGTGCAAAAGATGTTGTGATGCGGATGTTTGACGAACAGTATAGTAAAAAAATAG
ATGCAGTACAACTATCAAACAGTACCGTTGCACGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-145, - strand, RNAz p=0.768306

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-145, - strand, RNAz p=0.768306

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-516, gnl|bosTau2|chr15 (26856586-26856071)
               

               
               1-516, gnl|canFam2|chr21 (37200263-37200919)
               

               
               1-516, gnl|dasNov1|scaffold_256953 (958-302)
               

               
               1-516, gnl|echTel1|scaffold_309040 (12388-11741)
               

               
               1-516, gnl|hg17|chr11 (10832200-10832853)
               

               
               1-516, gnl|Hg17|chr11 (10832830-10832318)
               

               
               1-516, gnl|loxAfr1|scaffold_3868 (93866-94517)
               

               
               1-516, gnl|mm7|chr7 (107034204-107034907)
               

               
               1-516, gnl|Mm7|chr7 (107034885-107034322)
               

               
               1-516, gnl|panTro1|chr9 (11067557-11068210)
               

               
               1-516, gnl|rheMac2|chr14 (61092100-61091447)
               

               
               1-516, gnl|rn3|chr1 (168996943-168997587)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr15 (26856586-26856071)
               

               
               1-516, gnl|canFam2|chr21 (37200263-37200919)
               

               
               1-516, gnl|dasNov1|scaffold_256953 (958-302)
               

               
               1-516, gnl|echTel1|scaffold_309040 (12388-11741)
               

               
               1-516, gnl|hg17|chr11 (10832200-10832853)
               

               
               1-516, gnl|Hg17|chr11 (10832830-10832318)
               

               
               1-516, gnl|loxAfr1|scaffold_3868 (93866-94517)
               

               
               1-516, gnl|mm7|chr7 (107034204-107034907)
               

               
               1-516, gnl|Mm7|chr7 (107034885-107034322)
               

               
               1-516, gnl|panTro1|chr9 (11067557-11068210)
               

               
               1-516, gnl|rheMac2|chr14 (61092100-61091447)
               

               
               1-516, gnl|rn3|chr1 (168996943-168997587)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ldo (0.0970026)

	1-516, gnl\|bosTau2\|chr15 (26856586-26856071)
	1-516, gnl\|canFam2\|chr21 (37200263-37200919)
	1-516, gnl\|dasNov1\|scaffold_256953 (958-302)
	1-516, gnl\|echTel1\|scaffold_309040 (12388-11741)
	1-516, gnl\|hg17\|chr11 (10832200-10832853)
	1-516, gnl\|Hg17\|chr11 (10832830-10832318)
	1-516, gnl\|loxAfr1\|scaffold_3868 (93866-94517)
	1-516, gnl\|mm7\|chr7 (107034204-107034907)
	1-516, gnl\|Mm7\|chr7 (107034885-107034322)
	1-516, gnl\|panTro1\|chr9 (11067557-11068210)
	1-516, gnl\|rheMac2\|chr14 (61092100-61091447)
	1-516, gnl\|rn3\|chr1 (168996943-168997587)