Non-Coding RNA Search

Ss1.1-rpldo0106_b16.5

Sequence:


               
               GGGCACTATGCTTTATTAGAACTATTTTTAATCATAGATGTTTTCTTTGCTTCTAAGAGA
ATGCTTCCATAATGCGCAGAAAGTTGCTTCCAGTTAACTTCGGGGGCTGTTTTTGCTTTC
ATAGCTAGTGTAGTCCTCATCGTCAGCTGAGGTTTTATGGCAGATTAGACATGGGTGATG
TCTGGAATGGATTGCCAGAATGATGTTTGTATTGAGTTGACTTATTTGAGATGACAATTT
CCTATACCATGTAGTTTGAATACGCTGGGTAGGCTACTTCAGATCAGTCACTTCAATGCA
TCTTGTGTAAACTCTGTTTGTCCTTTATTCTTTAGTCGTGTTAATTCTTTTCTTACAAAA
AATTCATTTATTCTGATACTACTACTACTACTAGTAATAATTCAGTTTTCACCTCTGCAG
CAGAAGAGGGCTCTCATTTCCCCACCTTGACATAACGTGGGCTAGGCCTATCTAGTTTCA
TTTTTATGGTGGCCTTTTACCTGCATTATGGGCAGATACCTCCCTTTCACAATGAACAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCACTATGCTTTATTAGAACTATTTTTAATCATAGATGTTTTCTTTGCTTCTAAGAGA
ATGCTTCCATAATGCGCAGAAAGTTGCTTCCAGTTAACTTCGGGGGCTGTTTTTGCTTTC
ATAGCTAGTGTAGTCCTCATCGTCAGCTGAGGTTTTATGGCAGATTAGACATGGGTGATG
TCTGGAATGGATTGCCAGAATGATGTTTGTATTGAGTTGACTTATTTGAGATGACAATTT
CCTATACCATGTAGTTTGAATACGCTGGGTAGGCTACTTCAGATCAGTCACTTCAATGCA
TCTTGTGTAAACTCTGTTTGTCCTTTATTCTTTAGTCGTGTTAATTCTTTTCTTACAAAA
AATTCATTTATTCTGATACTACTACTACTACTAGTAATAATTCAGTTTTCACCTCTGCAG
CAGAAGAGGGCTCTCATTTCCCCACCTTGACATAACGTGGGCTAGGCCTATCTAGTTTCA
TTTTTATGGTGGCCTTTTACCTGCATTATGGGCAGATACCTCCCTTTCACAATGAACAAT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-194, gnl|bosTau2|chr16 (31749621-31749821)
               

               
               1-194, gnl|Hg17|chr1 (10300376-10300604)
               

               
               1-194, gnl|Mm7|chr4 (148225124-148224898)
               


               
               198-540, gnl|bosTau2|chr16 (31749800-31750134)
               

               
               198-540, gnl|Hg17|chr1 (10300579-10301240)
               

               
               198-540, gnl|Mm7|chr4 (148224919-148224645)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-194, gnl|bosTau2|chr16 (31749621-31749821)
               

               
               1-194, gnl|Hg17|chr1 (10300376-10300604)
               

               
               1-194, gnl|Mm7|chr4 (148225124-148224898)
               


               
               198-540, gnl|bosTau2|chr16 (31749800-31750134)
               

               
               198-540, gnl|Hg17|chr1 (10300579-10301240)
               

               
               198-540, gnl|Mm7|chr4 (148224919-148224645)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ldo (0.291008)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.291008)
               

               
               ese (0.126502)

	1-194, gnl\|bosTau2\|chr16 (31749621-31749821)
	1-194, gnl\|Hg17\|chr1 (10300376-10300604)
	1-194, gnl\|Mm7\|chr4 (148225124-148224898)

	198-540, gnl\|bosTau2\|chr16 (31749800-31750134)
	198-540, gnl\|Hg17\|chr1 (10300579-10301240)
	198-540, gnl\|Mm7\|chr4 (148224919-148224645)