Non-Coding RNA Search

Ss1.1-rpldo0106_c23.5

Sequence:


               
               ATCTTTGACTACACCACAGCTCACGGCCACACTGGATGCTTAACCCACTGAGAGAGGCTA
GGGATCGAACTTGCAACCTCATGGTTCCTAGTTGGATTCGTTTTCACTGTGCCACGACGG
GAACTCCTAACAAACTTTTGAACTATCTGAAAGTCCTAAAAGAGAAATTTAGTCCTGCCA
AAGTGAAAAACATTTACTTTAATGATGACAGAGAAACTTGACACTAACCTGTTACTTGCC
AATTTCCTCTATTAGATTTAATGTGCATTATTCTAAAAACAAACTGAATAAAATGTGAGA
TTGCAATTCTTATGGAATTTCAGTGAAATTACCAAATGGCACTCTAACACTTTGGTGTTA
GATACATAAATTAATATTGAATTGTAATACCTCAAAAGAATAGACACACAATTGTTCAGT
GTTAGGTTTAATACAAAGTATGGATTAAGCTACCATAGGAGTTACCTTTGTTTTCATGTA
CGATTCTCTTTCAAACTGAAAGCTCAATATCTTCTTAAAGAAGAAAGTTTGTACACATTT
TTGTTTGCATAATAGATTTAAGTTATAAATAGTGAATATTTCTAAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTTTGACTACACCACAGCTCACGGCCACACTGGATGCTTAACCCACTGAGAGAGGCTA
GGGATCGAACTTGCAACCTCATGGTTCCTAGTTGGATTCGTTTTCACTGTGCCACGACGG
GAACTCCTAACAAACTTTTGAACTATCTGAAAGTCCTAAAAGAGAAATTTAGTCCTGCCA
AAGTGAAAAACATTTACTTTAATGATGACAGAGAAACTTGACACTAACCTGTTACTTGCC
AATTTCCTCTATTAGATTTAATGTGCATTATTCTAAAAACAAACTGAATAAAATGTGAGA
TTGCAATTCTTATGGAATTTCAGTGAAATTACCAAATGGCACTCTAACACTTTGGTGTTA
GATACATAAATTAATATTGAATTGTAATACCTCAAAAGAATAGACACACAATTGTTCAGT
GTTAGGTTTAATACAAAGTATGGATTAAGCTACCATAGGAGTTACCTTTGTTTTCATGTA
CGATTCTCTTTCAAACTGAAAGCTCAATATCTTCTTAAAGAAGAAAGTTTGTACACATTT
TTGTTTGCATAATAGATTTAAGTTATAAATAGTGAATATTTCTAAGTA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               127-540, gnl|bosTau2|chr14 (35121116-35120699)
               

               
               127-540, gnl|Hg17|chr8 (107841381-107841028)
               

               
               127-540, gnl|Mm7|chr15 (41863798-41863238)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-540, gnl|bosTau2|chr14 (35121116-35120699)
               

               
               127-540, gnl|Hg17|chr8 (107841381-107841028)
               

               
               127-540, gnl|Mm7|chr15 (41863798-41863238)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               bfe (0.599431)
               

               
               ssp (0.271039)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.599431)
               

               
               ssp (0.271039)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

	127-540, gnl\|bosTau2\|chr14 (35121116-35120699)
	127-540, gnl\|Hg17\|chr8 (107841381-107841028)
	127-540, gnl\|Mm7\|chr15 (41863798-41863238)