Ss1.1-rpldo0106_m13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTTGGCTGCCGCCACCCTTAGGAATCACCGACCCCGGACGGCACTGCAGACCGCCGCC CAGGTTCTGGGAAGTTCTGGATTGTTTAACAACCATGGACTCCAAATACAGCAGCAACAG CAAAGGAATCTCTCACTACATGAATACATGAGTATGGAATTATTGCAAGAAGCTGGCGTC TCCATTCCCAAAGGACATGTGGCTAAGTCACCAGATGAGGCTTATGCAATTGCCAAAAAA TTAGGTTCAAAAGATGTTGTGATAAAGGCACAAGTTTTAGCTGGTGGTAGAGGAAAGGGA ACATTTGAAAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTCTCCAGAAGAAGCAAAA GCTGTTTCCTCACAAATGATTGGAAAAAAGTTGTTTACCAAGCAAACAGGAGAAAAGGGC AGAATATGCAATCAAGTACTGGTTTGTGAGCGAAGATATCCCAGGAGGGAATACTATTTT GCAATAACAATGGAAAGGTCATTTCAAGGCCCTGTATTAATCGGAAGTTCTCAAGGTGGT GTCAACATTGAAGATGTTGCTGCTGAGACGCCTGAGGCCATAGTTAAAGAACCTATTGAC ATTGTAGAAGGCATCAAAAAAGAACAAGCTGTCCGGCTTGCACAGAAGATGGGATTTCCA CCCAGTATTGTGGATTCTGCAGCAGAAAACATGATCAAGCTTTACAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTTGGCTGCCGCCACCCTTAGGAATCACCGACCCCGGACGGCACTGCAGACCGCCGCC CAGGTTCTGGGAAGTTCTGGATTGTTTAACAACCATGGACTCCAAATACAGCAGCAACAG CAAAGGAATCTCTCACTACATGAATACATGAGTATGGAATTATTGCAAGAAGCTGGCGTC TCCATTCCCAAAGGACATGTGGCTAAGTCACCAGATGAGGCTTATGCAATTGCCAAAAAA TTAGGTTCAAAAGATGTTGTGATAAAGGCACAAGTTTTAGCTGGTGGTAGAGGAAAGGGA ACATTTGAAAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTCTCCAGAAGAAGCAAAA GCTGTTTCCTCACAAATGATTGGAAAAAAGTTGTTTACCAAGCAAACAGGAGAAAAGGGC AGAATATGCAATCAAGTACTGGTTTGTGAGCGAAGATATCCCAGGAGGGAATACTATTTT GCAATAACAATGGAAAGGTCATTTCAAGGCCCTGTATTAATCGGAAGTTCTCAAGGTGGT GTCAACATTGAAGATGTTGCTGCTGAGACGCCTGAGGCCATAGTTAAAGAACCTATTGAC ATTGTAGAAGGCATCAAAAAAGAACAAGCTGTCCGGCTTGCACAGAAGATGGGATTTCCA CCCAGTATTGTGGATTCTGCAGCAGAAAACATGATCAAGCTTTACAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 62-252, gnl|bosTau2|chr12 (8025103-8025293) | |
| 62-252, gnl|canFam2|chr22 (6382602-6382892) | |
| 62-252, gnl|canFam2|chr22 (6382798-6382650) | |
| 62-252, gnl|canFam2|chr22 (6382814-6382596) | |
| 62-252, gnl|danRer3|chr6 (5029032-5028878) | |
| 62-252, gnl|danRer3|chr6 (5029036-5028809) | |
| 62-252, gnl|dasNov1|scaffold_21329 (2447-2749) | |
| 62-252, gnl|dasNov1|scaffold_21329 (2646-2498) | |
| 62-252, gnl|dasNov1|scaffold_21329 (2663-2444) | |
| 62-252, gnl|echTel1|scaffold_154813 (2172-2456) | |
| 62-252, gnl|echTel1|scaffold_154813 (2382-2166) | |
| 62-252, gnl|echTel1|scaffold_289082 (3396-3275) | |
| 62-252, gnl|fr1|chrUn (234870856-234870722) | |
| 62-252, gnl|fr1|chrUn (234870883-234870678) | |
| 62-252, gnl|galGal2|chr1 (160811155-160811312) | |
| 62-252, gnl|galGal2|chr1 (160811147-160811354) | |
| 62-252, gnl|hg17|chr1 (80301885-80302180) | |
| 62-252, gnl|hg17|chr13 (47468947-47469166) | |
| 62-252, gnl|Hg17|chr13 (47469161-47468971) | |
| 62-252, gnl|hg17|chr2 (25215914-25216072) | |
| 62-252, gnl|loxAfr1|scaffold_12066 (28101-28400) | |
| 62-252, gnl|loxAfr1|scaffold_12066 (28300-28152) | |
| 62-252, gnl|loxAfr1|scaffold_12066 (28317-28098) | |
| 62-252, gnl|mm7|chr14 (68242160-68242408) | |
| 62-252, gnl|mm7|chr14 (68242344-68242208) | |
| 62-252, gnl|mm7|chr14 (68242370-68242154) | |
| 62-252, gnl|Mm7|chr14 (68242157-68242344) | |
| 62-252, gnl|monDom2|scaffold_15 (59236207-59236519) | |
| 62-252, gnl|monDom2|scaffold_15 (59236415-59236249) | |
| 62-252, gnl|monDom2|scaffold_15 (59236423-59236201) | |
| 62-252, gnl|oryCun1|scaffold_194798 (770-502) | |
| 62-252, gnl|oryCun1|scaffold_194798 (557-776) | |
| 62-252, gnl|oryCun1|scaffold_210786 (49930-49799) | |
| 62-252, gnl|panTro1|chr1 (78905898-78906194) | |
| 62-252, gnl|panTro1|chr12 (26109417-26109553) | |
| 62-252, gnl|panTro1|chr14_random (13529410-13529629) | |
| 62-252, gnl|rheMac2|chr1 (82905347-82905675) | |
| 62-252, gnl|rheMac2|chr13 (25011042-25011180) | |
| 62-252, gnl|rheMac2|chr17 (26809438-26809657) | |
| 62-252, gnl|rn3|chr15 (54237975-54238237) | |
| 62-252, gnl|rn3|chr15 (54238165-54238023) | |
| 62-252, gnl|rn3|chr15 (54238190-54237969) | |
| 62-252, gnl|xenTro1|scaffold_133 (107553-107682) | |
| 62-252, gnl|xenTro1|scaffold_133 (107505-107739) | |
| 345-508, gnl|bosTau2|chr12 (8032078-8032241) | |
| 345-508, gnl|Hg17|chr13 (47460839-47460676) | |
| 345-508, gnl|Mm7|chr14 (68250580-68250743) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-252, gnl|bosTau2|chr12 (8025103-8025293) | |
| 62-252, gnl|canFam2|chr22 (6382602-6382892) | |
| 62-252, gnl|canFam2|chr22 (6382798-6382650) | |
| 62-252, gnl|canFam2|chr22 (6382814-6382596) | |
| 62-252, gnl|danRer3|chr6 (5029032-5028878) | |
| 62-252, gnl|danRer3|chr6 (5029036-5028809) | |
| 62-252, gnl|dasNov1|scaffold_21329 (2447-2749) | |
| 62-252, gnl|dasNov1|scaffold_21329 (2646-2498) | |
| 62-252, gnl|dasNov1|scaffold_21329 (2663-2444) | |
| 62-252, gnl|echTel1|scaffold_154813 (2172-2456) | |
| 62-252, gnl|echTel1|scaffold_154813 (2382-2166) | |
| 62-252, gnl|echTel1|scaffold_289082 (3396-3275) | |
| 62-252, gnl|fr1|chrUn (234870856-234870722) | |
| 62-252, gnl|fr1|chrUn (234870883-234870678) | |
| 62-252, gnl|galGal2|chr1 (160811155-160811312) | |
| 62-252, gnl|galGal2|chr1 (160811147-160811354) | |
| 62-252, gnl|hg17|chr1 (80301885-80302180) | |
| 62-252, gnl|hg17|chr13 (47468947-47469166) | |
| 62-252, gnl|Hg17|chr13 (47469161-47468971) | |
| 62-252, gnl|hg17|chr2 (25215914-25216072) | |
| 62-252, gnl|loxAfr1|scaffold_12066 (28101-28400) | |
| 62-252, gnl|loxAfr1|scaffold_12066 (28300-28152) | |
| 62-252, gnl|loxAfr1|scaffold_12066 (28317-28098) | |
| 62-252, gnl|mm7|chr14 (68242160-68242408) | |
| 62-252, gnl|mm7|chr14 (68242344-68242208) | |
| 62-252, gnl|mm7|chr14 (68242370-68242154) | |
| 62-252, gnl|Mm7|chr14 (68242157-68242344) | |
| 62-252, gnl|monDom2|scaffold_15 (59236207-59236519) | |
| 62-252, gnl|monDom2|scaffold_15 (59236415-59236249) | |
| 62-252, gnl|monDom2|scaffold_15 (59236423-59236201) | |
| 62-252, gnl|oryCun1|scaffold_194798 (770-502) | |
| 62-252, gnl|oryCun1|scaffold_194798 (557-776) | |
| 62-252, gnl|oryCun1|scaffold_210786 (49930-49799) | |
| 62-252, gnl|panTro1|chr1 (78905898-78906194) | |
| 62-252, gnl|panTro1|chr12 (26109417-26109553) | |
| 62-252, gnl|panTro1|chr14_random (13529410-13529629) | |
| 62-252, gnl|rheMac2|chr1 (82905347-82905675) | |
| 62-252, gnl|rheMac2|chr13 (25011042-25011180) | |
| 62-252, gnl|rheMac2|chr17 (26809438-26809657) | |
| 62-252, gnl|rn3|chr15 (54237975-54238237) | |
| 62-252, gnl|rn3|chr15 (54238165-54238023) | |
| 62-252, gnl|rn3|chr15 (54238190-54237969) | |
| 62-252, gnl|xenTro1|scaffold_133 (107553-107682) | |
| 62-252, gnl|xenTro1|scaffold_133 (107505-107739) | |
| 345-508, gnl|bosTau2|chr12 (8032078-8032241) | |
| 345-508, gnl|Hg17|chr13 (47460839-47460676) | |
| 345-508, gnl|Mm7|chr14 (68250580-68250743) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ste (0.540833) | |
| ldo (0.38801) | |
| nms (0.213858) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| csk (0.140746) | |
| ssp (0.13552) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.540833) | |
| ldo (0.38801) | |
| nms (0.213858) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| csk (0.140746) | |
| ssp (0.13552) |