Ss1.1-rpldo0106_m2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCAAGGGTCGCCAAGTGGGAAGTGGAGGTGATGGGGAACGCTGGGGTTCAGACAGAGG GTCGCGGGGCAGCCTCAACGAGCAGATTGCTCTTGTGCTCATGCGTCTGCAGGAGGACAT GCAGAACGTCCTCCAGAGACTCCACAAGCTGGAGACGCTGACAACTTCACAGGCAAAATC ATCAGCGTTACAGACCAGTAGTCAGCCCCCTTCACTGAGACCATCCTGGTGGCCCTTCGA GATGTCTCCTGGTGCATTAGCTTTTGCTATCATATGGCCTTTTATTGCCCAGTGGTTGGT GCATTTATACTATCAAAGAAGGAGAAGAAAACTGAACTGAAGAAAATGATATTTTACTGA AGAAGACTCCTGGGCCTGGATGACCTCAGGATGAAATGGATTGTGGAGCTCATACGAAAA TCCTAGTTTGCGATGATTATACTTCTTTTTGTTGTCCAGTAGTTTGGTTTGTGTACATAT ATACATATATATTTTTTGCACTACACAAATGATAACATTTTAAGGACTAATATTGCTGAT ACTTGAATAATCAATCTCAACTAGGTTATACATAGCATATATAGATTTACCCTACCCTTG AACTTGAAGGACATTAAATTATTAATTATTGTTTGGTAACATGTTTACCTGATTATCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCAAGGGTCGCCAAGTGGGAAGTGGAGGTGATGGGGAACGCTGGGGTTCAGACAGAGG GTCGCGGGGCAGCCTCAACGAGCAGATTGCTCTTGTGCTCATGCGTCTGCAGGAGGACAT GCAGAACGTCCTCCAGAGACTCCACAAGCTGGAGACGCTGACAACTTCACAGGCAAAATC ATCAGCGTTACAGACCAGTAGTCAGCCCCCTTCACTGAGACCATCCTGGTGGCCCTTCGA GATGTCTCCTGGTGCATTAGCTTTTGCTATCATATGGCCTTTTATTGCCCAGTGGTTGGT GCATTTATACTATCAAAGAAGGAGAAGAAAACTGAACTGAAGAAAATGATATTTTACTGA AGAAGACTCCTGGGCCTGGATGACCTCAGGATGAAATGGATTGTGGAGCTCATACGAAAA TCCTAGTTTGCGATGATTATACTTCTTTTTGTTGTCCAGTAGTTTGGTTTGTGTACATAT ATACATATATATTTTTTGCACTACACAAATGATAACATTTTAAGGACTAATATTGCTGAT ACTTGAATAATCAATCTCAACTAGGTTATACATAGCATATATAGATTTACCCTACCCTTG AACTTGAAGGACATTAAATTATTAATTATTGTTTGGTAACATGTTTACCTGATTATCTCC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-155, - strand, RNAz p=0.777138 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-155, - strand, RNAz p=0.777138 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-173, gnl|bosTau2|chr13 (9384279-9384451) | |
| 1-173, gnl|canFam2|chr2 (9775631-9775783) | |
| 1-173, gnl|danRer3|chrUn (159890202-159890354) | |
| 1-173, gnl|dasNov1|scaffold_44911 (7134-7286) | |
| 1-173, gnl|echTel1|scaffold_159614 (3337-3489) | |
| 1-173, gnl|fr1|chrUn (134024735-134024887) | |
| 1-173, gnl|galGal2|chr2 (15298303-15298455) | |
| 1-173, gnl|hg17|chr10 (27537180-27537332) | |
| 1-173, gnl|Hg17|chr10 (27537352-27537180) | |
| 1-173, gnl|loxAfr1|scaffold_58844 (11415-11567) | |
| 1-173, gnl|mm7|chr2 (23107078-23106926) | |
| 1-173, gnl|Mm7|chr2 (23106904-23107076) | |
| 1-173, gnl|monDom2|scaffold_7 (41508274-41508426) | |
| 1-173, gnl|oryCun1|scaffold_210946 (39314-39466) | |
| 1-173, gnl|panTro1|chr8 (27808507-27808659) | |
| 1-173, gnl|rheMac2|chr9 (27271393-27271545) | |
| 1-173, gnl|rn3|chr17 (96715788-96715636) | |
| 1-173, gnl|tetNig1|chr6 (5573862-5574014) | |
| 1-173, gnl|xenTro1|scaffold_42 (874334-874486) | |
| 325-660, gnl|bosTau2|chr13 (9394629-9394957) | |
| 325-660, gnl|Hg17|chr10 (27526380-27526045) | |
| 325-660, gnl|Mm7|chr2 (23119813-23120134) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-173, gnl|bosTau2|chr13 (9384279-9384451) | |
| 1-173, gnl|canFam2|chr2 (9775631-9775783) | |
| 1-173, gnl|danRer3|chrUn (159890202-159890354) | |
| 1-173, gnl|dasNov1|scaffold_44911 (7134-7286) | |
| 1-173, gnl|echTel1|scaffold_159614 (3337-3489) | |
| 1-173, gnl|fr1|chrUn (134024735-134024887) | |
| 1-173, gnl|galGal2|chr2 (15298303-15298455) | |
| 1-173, gnl|hg17|chr10 (27537180-27537332) | |
| 1-173, gnl|Hg17|chr10 (27537352-27537180) | |
| 1-173, gnl|loxAfr1|scaffold_58844 (11415-11567) | |
| 1-173, gnl|mm7|chr2 (23107078-23106926) | |
| 1-173, gnl|Mm7|chr2 (23106904-23107076) | |
| 1-173, gnl|monDom2|scaffold_7 (41508274-41508426) | |
| 1-173, gnl|oryCun1|scaffold_210946 (39314-39466) | |
| 1-173, gnl|panTro1|chr8 (27808507-27808659) | |
| 1-173, gnl|rheMac2|chr9 (27271393-27271545) | |
| 1-173, gnl|rn3|chr17 (96715788-96715636) | |
| 1-173, gnl|tetNig1|chr6 (5573862-5574014) | |
| 1-173, gnl|xenTro1|scaffold_42 (874334-874486) | |
| 325-660, gnl|bosTau2|chr13 (9394629-9394957) | |
| 325-660, gnl|Hg17|chr10 (27526380-27526045) | |
| 325-660, gnl|Mm7|chr2 (23119813-23120134) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.135208) | |
| ldo (0.0970026) |