Non-Coding RNA Search

Ss1.1-rpldo0106_n20.5

Sequence:


               
               GAGAACAAGGAGAGGAAACCCAGCGACGACAGCAGCAGCCCCATCCCTGGCCAGAAGCTG
GGTGGCTCCTACCTGTCGCCCTTCCCCCACTCCCCCTACAAGCACGCCCACATCCCAGCG
CATGCGCAGCACTACCAGAGCTACATGCAGCTGATCCAGCAGAAGTCGGCTGTCGAGTAC
GCACAGAGCCAGATGAGCCTGGTGAGCATGTGCAAGGACCTGAACTCCGCCAACCAGTTG
GAGCCGAGGATGGAATGGAAAGTGAAGATCCGGAGCGACGGGACACGTTACATCACCAAG
CGGCCGGTGCGGGACCGTCTGCTGCGGGAGCGGGCACTCAAGATCCGGGAGGAGCGCAGC
GGCATGACCACGGACGACGATGCAGTGAGCGAGATGAAGATGGGGCGGTACTGGAGCAAG
GAGGAGAGGAAGCAGCATGTGGTGAAGGCCAAGGAGCAGAGGCGCAGGCGCGAGTTCATG
ATGCAGAGCCGGCTCGACTGCCTGAAGGAGCAGCAAGGGGCCGACGACCGGAAGGAGATG
AACATCCTCGAACTCAGCCACAAAAAGATGATGAAGAAGAGGAATAAAAAGATATTTGAT
AACTGGATGACAATCCAAGAACTCTTAACCCATGGCACGAAATCTCCAGACGGCACTAGA
GTATACAATTCGTTCCTATCGGTGACTACTGTATAATTTCCACTTCTGCATTATGTACAG
AAAGGAGAACACTACCATTGGGGTAGAAATTCCTGCCTCGTTCAATGTGGCAAGTTTTTG
TATATAAGATAAATACCGTCATCGTGTTTATAGTCGAAATTGGCGAGCCCTACAACTCTG
GGTGTCCTAGCTCTATTTTAAGTGGAGAAAAACCACCCATATAACGATCTATCTTGGAAG
GCAATATTAACAAACAGAGCTCTTTTCAAATAGCAGTGGTACTTTTTTACTTGTTATCTT
TTACATAAAGTGTTTAAATTTCAAAAAGATCTTTTATTAAGCATACTTTCACAGAATTTG
TTTAAACCTATATTCATATAAAAAAAAAAGTTAAACACGCTTTTTTTTCCTGCCGAAACC
ACAGATATGACTGCCAGTATGTATTTTTAATGGAACTCTATTTTATAATGTTACTTTGCT
GAATGTATTTCATATGGGTGACCGTTAATATATTATTTAGGTCAGAGCTTCAACTCAAAA
CCACCAAACTCTTTGGTAACAATTCAATACACATAACGATACCAGCAGTGTTTAGATTTG
GGATACATATTTAAACATTTTTCTGGTCAAAGTTCCCAAGAGAGTGTAAAGGTTTTAACA
GAAAGCAAAATATAATGCAGATTTGTGGAAGTTTAAAGCATGTTTGCAAATATTGCAGCC
GTTGGAAGACTTTGCATGTACAGGAAAGTTGTGGATGGAGATGGTTTGTGGAATTTTAAG
TGCTTATTGTAGTAAACCTTTGCTTTGTAGGTTCGAAGGGACGGACTTTTACGAGATTTA
CAAAATCATGATTAGTTACAAACATTAAGTAAAATGAAGTTAAATAAATTATTTTCTATT
TGATATCTTTTGAAGTGATTCCTCATTTTGCACTGGTGCCTATAAAATAAAAGCCTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAACAAGGAGAGGAAACCCAGCGACGACAGCAGCAGCCCCATCCCTGGCCAGAAGCTG
GGTGGCTCCTACCTGTCGCCCTTCCCCCACTCCCCCTACAAGCACGCCCACATCCCAGCG
CATGCGCAGCACTACCAGAGCTACATGCAGCTGATCCAGCAGAAGTCGGCTGTCGAGTAC
GCACAGAGCCAGATGAGCCTGGTGAGCATGTGCAAGGACCTGAACTCCGCCAACCAGTTG
GAGCCGAGGATGGAATGGAAAGTGAAGATCCGGAGCGACGGGACACGTTACATCACCAAG
CGGCCGGTGCGGGACCGTCTGCTGCGGGAGCGGGCACTCAAGATCCGGGAGGAGCGCAGC
GGCATGACCACGGACGACGATGCAGTGAGCGAGATGAAGATGGGGCGGTACTGGAGCAAG
GAGGAGAGGAAGCAGCATGTGGTGAAGGCCAAGGAGCAGAGGCGCAGGCGCGAGTTCATG
ATGCAGAGCCGGCTCGACTGCCTGAAGGAGCAGCAAGGGGCCGACGACCGGAAGGAGATG
AACATCCTCGAACTCAGCCACAAAAAGATGATGAAGAAGAGGAATAAAAAGATATTTGAT
AACTGGATGACAATCCAAGAACTCTTAACCCATGGCACGAAATCTCCAGACGGCACTAGA
GTATACAATTCGTTCCTATCGGTGACTACTGTATAATTTCCACTTCTGCATTATGTACAG
AAAGGAGAACACTACCATTGGGGTAGAAATTCCTGCCTCGTTCAATGTGGCAAGTTTTTG
TATATAAGATAAATACCGTCATCGTGTTTATAGTCGAAATTGGCGAGCCCTACAACTCTG
GGTGTCCTAGCTCTATTTTAAGTGGAGAAAAACCACCCATATAACGATCTATCTTGGAAG
GCAATATTAACAAACAGAGCTCTTTTCAAATAGCAGTGGTACTTTTTTACTTGTTATCTT
TTACATAAAGTGTTTAAATTTCAAAAAGATCTTTTATTAAGCATACTTTCACAGAATTTG
TTTAAACCTATATTCATATAAAAAAAAAAGTTAAACACGCTTTTTTTTCCTGCCGAAACC
ACAGATATGACTGCCAGTATGTATTTTTAATGGAACTCTATTTTATAATGTTACTTTGCT
GAATGTATTTCATATGGGTGACCGTTAATATATTATTTAGGTCAGAGCTTCAACTCAAAA
CCACCAAACTCTTTGGTAACAATTCAATACACATAACGATACCAGCAGTGTTTAGATTTG
GGATACATATTTAAACATTTTTCTGGTCAAAGTTCCCAAGAGAGTGTAAAGGTTTTAACA
GAAAGCAAAATATAATGCAGATTTGTGGAAGTTTAAAGCATGTTTGCAAATATTGCAGCC
GTTGGAAGACTTTGCATGTACAGGAAAGTTGTGGATGGAGATGGTTTGTGGAATTTTAAG
TGCTTATTGTAGTAAACCTTTGCTTTGTAGGTTCGAAGGGACGGACTTTTACGAGATTTA
CAAAATCATGATTAGTTACAAACATTAAGTAAAATGAAGTTAAATAAATTATTTTCTATT
TGATATCTTTTGAAGTGATTCCTCATTTTGCACTGGTGCCTATAAAATAAAAGCCTTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               703-822, + strand, RNAz p=0.534377

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               703-822, + strand, RNAz p=0.534377

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015009, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015009, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-1619, gnl|bosTau2|chr22 (21403201-21401621)
               

               
               23-1619, gnl|Hg17|chr3 (73515873-73514282)
               

               
               23-1619, gnl|Mm7|chr6 (101241369-101239774)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-1619, gnl|bosTau2|chr22 (21403201-21401621)
               

               
               23-1619, gnl|Hg17|chr3 (73515873-73514282)
               

               
               23-1619, gnl|Mm7|chr6 (101241369-101239774)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               lin (0.582411)
               

               
               ldo (0.291008)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               ldo (0.291008)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	23-1619, gnl\|bosTau2\|chr22 (21403201-21401621)
	23-1619, gnl\|Hg17\|chr3 (73515873-73514282)
	23-1619, gnl\|Mm7\|chr6 (101241369-101239774)

	lin (0.582411)
	ldo (0.291008)
	nms (0.213858)
	fbs (0.175346)
	sin (0.174948)
	mcp (0.170648)
	cut (0.169924)
	liv (0.146284)
	csk (0.140746)
	cst (0.140036)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	eje (0.0988338)