Non-Coding RNA Search

Ss1.1-rpldo0106_p3.5

Sequence:


               
               AAACACATTCATAATGAGAATTGAGACTCTAAATTGTGGTAAATATTATTGGAGCCATAC
AACTGAAACTGTAACTACTCTTCCATCTTTTCTCCTTTACTCATAAAGTTGATCATGTAG
AACTTGATGACACCCTCTTGGTGGTTCTCAACCACAATAGTGCTGTCACCAAATGGTGGT
TGGTGATGCTAGGGCATAGTTTTGGTTGTCACGTGACTGGGGGTACATTTAGTGCCCAGT
GTCCAAAGTGGTAACATCCCTTGGGCCAGGGACAGTCCCACCCTATAAAGAATTCCATCC
AAAATACCCATAGGATCGTCCCTTCCTCCACTGAGAAACTTAGCTAAACCTGGCAGTTTT
AGAATTCCACATCTTACTTTTTCTCCCCGACATGAACTTACCCAAGTCAAAAGATGCATT
TGCAGAATTACAGCCACTTACACATTCTGAATTTGGTAGATTTGTGCCACTTATCTTAAG
GCCTCTCTTGTGGAAATGGTTTTTTTCCCCTTAAGCACACTGGTGGAAACTTGATCAAAC
AGCTCAATTTAGCGGGAGAGGGGAGGATGTCACTCTCTCTTTGCCCTGATTCCACTATAA
ATTTTTAAAAATATCACTGAAGTACCTATAATTCTGCAAAGTAGGCAGGATAATTTAAAA
GGACCCGTTTCTGAACAGTCTTTTGATGTAAGCAAGATCACATTTTAATATTTTGCATAA
ATAAGCAATGGGAAGAGGTGGGAGGCACAGAGCACACTTGTTTTCAATGCTCTGGAGATG
TTGAGGGCCCATTTTCAGCCAGTAGTTTTATTTATTTATGTTTTCAGCCAATGATCCTAA
TATGCAGTGGGTCTGTTAGCCTTTACGACCACTTGGGGAATTCCAACTTGATCCCAGGGA
AAACCGAGGAATTGGGGTGGGGCGCGCAGTTTAGAAGAGATCAGAAATGATGTCTCATGG
CGCTACAATGTACACAACTGAATTTTTCGGAGTCTCCATTGGAGTGGTCAGAATTTCATG
AAAGGTAATTTTAAAACATTCTGAGTTAAATCTCGATCCTTTTTTAATTTTTTTTTTGAT
ACACTAGACTTGTTGCTGCCTTTGAAACTAGCAGAGTGTCACTCTGCCACATGCATCATA
GAGCATAATTTTTCTATAATCAGGTGCCTTTTGCTGCTTTGGGGTAAGACTGTTTTCCTG
TTTATATTAAGCGTTGCCAGGGAGAAGCATTGGTTCTGTTCTTTCAGTGGTAGCATAGCC
TGCTAGCCCTGGATGTGGCTTCCCTGATCAGAAACAAGTGTCCACCAGGACACCTGGGGG
ACTAGCCCCGTTTCCTCGGCCTCCAGCTTAGTTTGCGCTCCATAGCCTGTGAGGAGCTTT
CTGGTGTGGGATTATTTACTTCAAACCTAGAGTTTCGTGCACCTACATTAACTATTTTAT
ATCATGTGCAGAATAACAGATCTTTTAATGTCAGATACTCTATACACTGCACATATTGCT
TTTGCACTGTTTTAAAGATTTTGTACTAAATGATAGAAATTATTTATATTCTTTGAGTGT
GAGCTTTGAATAGATGGCGTTATCACTTTATTGTTTAAAAAAAAATGGTTTTCTCAATTA
TTCTATAGCAATGTTATTCTGAGCAAGTCCTATGCCAAAAATCTTGTATCGTGTTTGTAT
GGAAGATTAAAATTTTACTTATGTGTGGTAAGACTACTGAGTTACTGACTTCATGGTTGG
AATTTGATATTCCAGCCCAAAGTCCACAATGTATCCAGAAATCCAAGTTGGTGTCATACA
TTTTACCTTGATGTGAACTTCTCTTTGCTTTCCTTTGTTTTAAGACTCCATTTTGCAATA
AACGTTTTGACAGTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACACATTCATAATGAGAATTGAGACTCTAAATTGTGGTAAATATTATTGGAGCCATAC
AACTGAAACTGTAACTACTCTTCCATCTTTTCTCCTTTACTCATAAAGTTGATCATGTAG
AACTTGATGACACCCTCTTGGTGGTTCTCAACCACAATAGTGCTGTCACCAAATGGTGGT
TGGTGATGCTAGGGCATAGTTTTGGTTGTCACGTGACTGGGGGTACATTTAGTGCCCAGT
GTCCAAAGTGGTAACATCCCTTGGGCCAGGGACAGTCCCACCCTATAAAGAATTCCATCC
AAAATACCCATAGGATCGTCCCTTCCTCCACTGAGAAACTTAGCTAAACCTGGCAGTTTT
AGAATTCCACATCTTACTTTTTCTCCCCGACATGAACTTACCCAAGTCAAAAGATGCATT
TGCAGAATTACAGCCACTTACACATTCTGAATTTGGTAGATTTGTGCCACTTATCTTAAG
GCCTCTCTTGTGGAAATGGTTTTTTTCCCCTTAAGCACACTGGTGGAAACTTGATCAAAC
AGCTCAATTTAGCGGGAGAGGGGAGGATGTCACTCTCTCTTTGCCCTGATTCCACTATAA
ATTTTTAAAAATATCACTGAAGTACCTATAATTCTGCAAAGTAGGCAGGATAATTTAAAA
GGACCCGTTTCTGAACAGTCTTTTGATGTAAGCAAGATCACATTTTAATATTTTGCATAA
ATAAGCAATGGGAAGAGGTGGGAGGCACAGAGCACACTTGTTTTCAATGCTCTGGAGATG
TTGAGGGCCCATTTTCAGCCAGTAGTTTTATTTATTTATGTTTTCAGCCAATGATCCTAA
TATGCAGTGGGTCTGTTAGCCTTTACGACCACTTGGGGAATTCCAACTTGATCCCAGGGA
AAACCGAGGAATTGGGGTGGGGCGCGCAGTTTAGAAGAGATCAGAAATGATGTCTCATGG
CGCTACAATGTACACAACTGAATTTTTCGGAGTCTCCATTGGAGTGGTCAGAATTTCATG
AAAGGTAATTTTAAAACATTCTGAGTTAAATCTCGATCCTTTTTTAATTTTTTTTTTGAT
ACACTAGACTTGTTGCTGCCTTTGAAACTAGCAGAGTGTCACTCTGCCACATGCATCATA
GAGCATAATTTTTCTATAATCAGGTGCCTTTTGCTGCTTTGGGGTAAGACTGTTTTCCTG
TTTATATTAAGCGTTGCCAGGGAGAAGCATTGGTTCTGTTCTTTCAGTGGTAGCATAGCC
TGCTAGCCCTGGATGTGGCTTCCCTGATCAGAAACAAGTGTCCACCAGGACACCTGGGGG
ACTAGCCCCGTTTCCTCGGCCTCCAGCTTAGTTTGCGCTCCATAGCCTGTGAGGAGCTTT
CTGGTGTGGGATTATTTACTTCAAACCTAGAGTTTCGTGCACCTACATTAACTATTTTAT
ATCATGTGCAGAATAACAGATCTTTTAATGTCAGATACTCTATACACTGCACATATTGCT
TTTGCACTGTTTTAAAGATTTTGTACTAAATGATAGAAATTATTTATATTCTTTGAGTGT
GAGCTTTGAATAGATGGCGTTATCACTTTATTGTTTAAAAAAAAATGGTTTTCTCAATTA
TTCTATAGCAATGTTATTCTGAGCAAGTCCTATGCCAAAAATCTTGTATCGTGTTTGTAT
GGAAGATTAAAATTTTACTTATGTGTGGTAAGACTACTGAGTTACTGACTTCATGGTTGG
AATTTGATATTCCAGCCCAAAGTCCACAATGTATCCAGAAATCCAAGTTGGTGTCATACA
TTTTACCTTGATGTGAACTTCTCTTTGCTTTCCTTTGTTTTAAGACTCCATTTTGCAATA
AACGTTTTGACAGTAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               691-809, - strand, RNAz p=0.987484
               

               
               1247-1364, - strand, RNAz p=0.795251

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               691-809, - strand, RNAz p=0.987484
               

               
               1247-1364, - strand, RNAz p=0.795251

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               7-809, gnl|bosTau2|chr2 (15400711-15399932)
               

               
               7-809, gnl|Hg17|chr2 (173915243-173916342)
               


               
               897-1877, gnl|bosTau2|chr2 (15399893-15398905)
               

               
               897-1877, gnl|Hg17|chr2 (173916383-173917381)
               

               
               897-1877, gnl|Mm7|chr2 (72250032-72251212)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-809, gnl|bosTau2|chr2 (15400711-15399932)
               

               
               7-809, gnl|Hg17|chr2 (173915243-173916342)
               


               
               897-1877, gnl|bosTau2|chr2 (15399893-15398905)
               

               
               897-1877, gnl|Hg17|chr2 (173916383-173917381)
               

               
               897-1877, gnl|Mm7|chr2 (72250032-72251212)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               ldo (1.45504)
               

               
               vin (1.33023)
               

               
               tbr (1.07925)
               

               
               isp (1.05263)
               

               
               bfe (1.049)
               

               
               ste (0.811249)
               

               
               sme (0.610874)
               

               
               gul (0.532765)
               

               
               cmu (0.372787)
               

               
               rec (0.346141)
               

               
               lnt (0.284616)
               

               
               hlv (0.278513)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               aor (0.195274)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (1.45504)
               

               
               vin (1.33023)
               

               
               tbr (1.07925)
               

               
               isp (1.05263)
               

               
               bfe (1.049)
               

               
               ste (0.811249)
               

               
               sme (0.610874)
               

               
               gul (0.532765)
               

               
               cmu (0.372787)
               

               
               rec (0.346141)
               

               
               lnt (0.284616)
               

               
               hlv (0.278513)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               aor (0.195274)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

	691-809, - strand, RNAz p=0.987484
	1247-1364, - strand, RNAz p=0.795251

	7-809, gnl\|bosTau2\|chr2 (15400711-15399932)
	7-809, gnl\|Hg17\|chr2 (173915243-173916342)

	897-1877, gnl\|bosTau2\|chr2 (15399893-15398905)
	897-1877, gnl\|Hg17\|chr2 (173916383-173917381)
	897-1877, gnl\|Mm7\|chr2 (72250032-72251212)

	ldo (1.45504)
	vin (1.33023)
	tbr (1.07925)
	isp (1.05263)
	bfe (1.049)
	ste (0.811249)
	sme (0.610874)
	gul (0.532765)
	cmu (0.372787)
	rec (0.346141)
	lnt (0.284616)
	hlv (0.278513)
	lyg (0.266205)
	bla (0.248694)
	eru (0.240096)
	aor (0.195274)
	cut (0.169924)
	mga (0.160205)
	ski (0.146735)
	che (0.136314)
	ssp (0.13552)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)
	clu (0.119646)