Non-Coding RNA Search

Ss1.1-rpldo0107_b11.5

Sequence:


               
               AGAGGGCGGGGCCCCACGCGCGGCGCGGGGCGGGGCGGGGCGGGTTGGTGACTCTCTGGG
ATTCGGCACTTTATCAGGAGCTGGGTGGTTTCAGACTCTCCAAGCGGAGGGTGTTTGAAC
GCGTCATCTGCGAGTGCAGGGACCCTTTGCTGACGCTGGGGGCGCCAAGAAAGCAGACCA
CGGCTCTTCTGCGGCTGGGGTTTGGCTGTCCCTGGAGCTCTGGGCTGTCCCGTGGAAGTG
ACCAGAATTAGCAATATGCTTTTAAATGTGGGGAAAGCGAATGACACTTTTAAGACAATG
ACCATTATCAAAACAAAATGTATAATTTCTTAATTTGAACAATAAATTAAGTGTTTAAAT
GCTATTTGTAGTCTTGATATACAAAAATAAAATAATTAGGGTTTTGTCCTTGGTTTTATT
TTCATTTTAGGTTTTCTGTTGAATGTTCTAGGTCTTCTCTGCTTAGTAGTTGATCTGTAT
ATTCTATTATCAGTCTTTTGGAAATGAAATATCTGGGACTGAAAAGAAATGGGCAGTTAC
ACTTTGGGGGTTTTTCCTCAGTCATCCTGAGCGTATTTATTTATTTGTATGTTCCAGTGG
CTAAATATTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGGCGGGGCCCCACGCGCGGCGCGGGGCGGGGCGGGGCGGGTTGGTGACTCTCTGGG
ATTCGGCACTTTATCAGGAGCTGGGTGGTTTCAGACTCTCCAAGCGGAGGGTGTTTGAAC
GCGTCATCTGCGAGTGCAGGGACCCTTTGCTGACGCTGGGGGCGCCAAGAAAGCAGACCA
CGGCTCTTCTGCGGCTGGGGTTTGGCTGTCCCTGGAGCTCTGGGCTGTCCCGTGGAAGTG
ACCAGAATTAGCAATATGCTTTTAAATGTGGGGAAAGCGAATGACACTTTTAAGACAATG
ACCATTATCAAAACAAAATGTATAATTTCTTAATTTGAACAATAAATTAAGTGTTTAAAT
GCTATTTGTAGTCTTGATATACAAAAATAAAATAATTAGGGTTTTGTCCTTGGTTTTATT
TTCATTTTAGGTTTTCTGTTGAATGTTCTAGGTCTTCTCTGCTTAGTAGTTGATCTGTAT
ATTCTATTATCAGTCTTTTGGAAATGAAATATCTGGGACTGAAAAGAAATGGGCAGTTAC
ACTTTGGGGGTTTTTCCTCAGTCATCCTGAGCGTATTTATTTATTTGTATGTTCCAGTGG
CTAAATATTTGC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               193-610, gnl|bosTau2|chr4 (69037976-69037559)
               

               
               193-610, gnl|Hg17|chr7 (156561076-156561517)
               

               
               193-610, gnl|Mm7|chr5 (28708565-28708959)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-610, gnl|bosTau2|chr4 (69037976-69037559)
               

               
               193-610, gnl|Hg17|chr7 (156561076-156561517)
               

               
               193-610, gnl|Mm7|chr5 (28708565-28708959)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               elu (0.770713)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               nje (0.16592)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               nje (0.16592)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	193-610, gnl\|bosTau2\|chr4 (69037976-69037559)
	193-610, gnl\|Hg17\|chr7 (156561076-156561517)
	193-610, gnl\|Mm7\|chr5 (28708565-28708959)

	elu (0.770713)
	csp (0.322373)
	cag (0.302389)
	cga (0.279096)
	nje (0.16592)
	jca (0.11396)
	spc (0.113366)
	nbm (0.0993246)
	ldo (0.0970026)