Ss1.1-rpldo0107_n16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCTGCGCCGGGGGCTTCTGGGAAACGGCTTGTGAGCGGCGGCGTTTCTGCGTCGGCCG TGGACAGCGAAGCGGTTGCAGTTCCCGAGCTTGAGGAGTGCCTGTGAAGAAAACAGGGTA TTTCCCTGAGGCCTGTCTCCTACCTTGATTGTCTTTTCTTGGAGTATTATAAATCAGGAT GTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAACTCCAGATGAAGAGGA AAAAATTCTGAGGGTGAAGTTGGAGGAGGATCCTGATGGCGAAGAGGGGTCAAGTATCCC TTGGAACCACCTCCCTGACCCGGAGGTTTTCCGACAGCGATTCAGGCAGTTTGGATACCA GGATTCACCTGGGCCCCGTGAAGCTGTGAGCCAGCTTCGAGAACTTTGCCGTCTATGGCT CAGGCCAGAGACACACACAAAAGAACAAATCTTGGAGCTGGTAGTACTGGAGCAGTTTGT TGCCATCCTGCCCAAGGAGCTACAGACTTGGGTTCGAGAGCATCATCCAGAGAATGGAGA GGAGGCAGTGACCGTTCTAGAGGATTTAGAGAGTGAGCTAGATGACCCTGGACAGCCGGT TTCTCTTCGGCGACGAAAACGGGACGTGCTAGTAGAGGAGATTGTATCTCAAGAAGAAGC TCAGGGATTACCAAGTTCTGAGCTTGATGCTGTGGAAAACCAGCTCAAGTGGGCATCCTG GGAGCTCCACTCCTTAAGGCACTGTGATGATGATGCTAGGACTGAAAATGGAGCACTTGC TCCAAAGCAGGAGATTCCTTCAGCAGTAGAATCTCATGAAGCTCCTGGCACTCTCAATAT AGGTGTTTCGCAGATTTTTAAGTATGGAGAAGCCTGTTTCCCCAAGGGCAGGTTTGAAAG AAAGAGAAATCCCTCCCGAAAGAAACAACATATATGTGATGAATGTGGAAAACACTTCAG TCAGGGCTCGGCCCTTATTCTTCATCAAAGAATCCACAGTGGGGAGAAACCCTATGGATG TGTTGAATGTGGGAAAGCATTCAGCAGGAGTTCCATCCTTGTGCAACACCAGAGAGTCCA TACTGGAGAAAAACCTTACAAATGTCTTGAATGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCTGCGCCGGGGGCTTCTGGGAAACGGCTTGTGAGCGGCGGCGTTTCTGCGTCGGCCG TGGACAGCGAAGCGGTTGCAGTTCCCGAGCTTGAGGAGTGCCTGTGAAGAAAACAGGGTA TTTCCCTGAGGCCTGTCTCCTACCTTGATTGTCTTTTCTTGGAGTATTATAAATCAGGAT GTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAACTCCAGATGAAGAGGA AAAAATTCTGAGGGTGAAGTTGGAGGAGGATCCTGATGGCGAAGAGGGGTCAAGTATCCC TTGGAACCACCTCCCTGACCCGGAGGTTTTCCGACAGCGATTCAGGCAGTTTGGATACCA GGATTCACCTGGGCCCCGTGAAGCTGTGAGCCAGCTTCGAGAACTTTGCCGTCTATGGCT CAGGCCAGAGACACACACAAAAGAACAAATCTTGGAGCTGGTAGTACTGGAGCAGTTTGT TGCCATCCTGCCCAAGGAGCTACAGACTTGGGTTCGAGAGCATCATCCAGAGAATGGAGA GGAGGCAGTGACCGTTCTAGAGGATTTAGAGAGTGAGCTAGATGACCCTGGACAGCCGGT TTCTCTTCGGCGACGAAAACGGGACGTGCTAGTAGAGGAGATTGTATCTCAAGAAGAAGC TCAGGGATTACCAAGTTCTGAGCTTGATGCTGTGGAAAACCAGCTCAAGTGGGCATCCTG GGAGCTCCACTCCTTAAGGCACTGTGATGATGATGCTAGGACTGAAAATGGAGCACTTGC TCCAAAGCAGGAGATTCCTTCAGCAGTAGAATCTCATGAAGCTCCTGGCACTCTCAATAT AGGTGTTTCGCAGATTTTTAAGTATGGAGAAGCCTGTTTCCCCAAGGGCAGGTTTGAAAG AAAGAGAAATCCCTCCCGAAAGAAACAACATATATGTGATGAATGTGGAAAACACTTCAG TCAGGGCTCGGCCCTTATTCTTCATCAAAGAATCCACAGTGGGGAGAAACCCTATGGATG TGTTGAATGTGGGAAAGCATTCAGCAGGAGTTCCATCCTTGTGCAACACCAGAGAGTCCA TACTGGAGAAAAACCTTACAAATGTCTTGAATGTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 195-474, - strand, RNAz p=0.985689 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 195-474, - strand, RNAz p=0.985689 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 76-600, gnl|bosTau2|chr24 (17010171-17010691) | |
| 76-600, gnl|Hg17|chr18 (31174715-31174191) | |
| 76-600, gnl|Mm7|chr18 (24402845-24402323) | |
| 228-588, gnl|bosTau2|chr23 (25658137-25658497) | |
| 228-588, gnl|Hg17|chr6 (28405429-28405069) | |
| 228-588, gnl|Mm7|chr13 (20778050-20778379) | |
| 233-572, gnl|bosTau2|chr15 (19143718-19143382) | |
| 233-572, gnl|canFam2|chr5 (13721301-13720956) | |
| 233-572, gnl|dasNov1|scaffold_93729 (5833-5513) | |
| 233-572, gnl|echTel1|scaffold_303413 (80665-81002) | |
| 233-572, gnl|hg17|chr11 (123106317-123106662) | |
| 233-572, gnl|Hg17|chr11 (123106767-123106431) | |
| 233-572, gnl|loxAfr1|scaffold_11701 (33363-33018) | |
| 233-572, gnl|mm7|chr9 (40137679-40137340) | |
| 233-572, gnl|Mm7|chr9 (40137233-40137569) | |
| 233-572, gnl|monDom2|scaffold_2 (112722771-112722438) | |
| 233-572, gnl|oryCun1|scaffold_143249 (14890-14545) | |
| 233-572, gnl|panTro1|chr9 (125147706-125148051) | |
| 233-572, gnl|rheMac2|chr14 (122093376-122093720) | |
| 233-572, gnl|rn3|chr8 (43167739-43167398) | |
| 233-572, gnl|xenTro1|scaffold_1098 (193190-192830) | |
| 314-497, gnl|bosTau2|chr13 (46206175-46206358) | |
| 314-497, gnl|canFam2|chr24 (27793270-27793767) | |
| 314-497, gnl|dasNov1|scaffold_2507 (103656-104125) | |
| 314-497, gnl|echTel1|scaffold_309798 (84835-85263) | |
| 314-497, gnl|hg17|chr20 (34005015-34005511) | |
| 314-497, gnl|Hg17|chr20 (34005317-34005134) | |
| 314-497, gnl|loxAfr1|scaffold_29083 (12644-13151) | |
| 314-497, gnl|mm7|chr2 (156052753-156053103) | |
| 314-497, gnl|Mm7|chr2 (156053014-156052831) | |
| 314-497, gnl|monDom2|scaffold_6 (11109423-11108930) | |
| 314-497, gnl|oryCun1|scaffold_143027 (25188-24754) | |
| 314-497, gnl|panTro1|chr21 (36225996-36226492) | |
| 314-497, gnl|rheMac2|chr10 (28569615-28569119) | |
| 314-497, gnl|rn3|chr3 (146616106-146616456) | |
| 903-1116, gnl|bosTau2|chr10 (8996695-8996482) | |
| 903-1116, gnl|Hg17|chr19 (42818500-42818287) | |
| 903-1116, gnl|Mm7|chr2 (127310126-127309913) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 76-600, gnl|bosTau2|chr24 (17010171-17010691) | |
| 76-600, gnl|Hg17|chr18 (31174715-31174191) | |
| 76-600, gnl|Mm7|chr18 (24402845-24402323) | |
| 228-588, gnl|bosTau2|chr23 (25658137-25658497) | |
| 228-588, gnl|Hg17|chr6 (28405429-28405069) | |
| 228-588, gnl|Mm7|chr13 (20778050-20778379) | |
| 233-572, gnl|bosTau2|chr15 (19143718-19143382) | |
| 233-572, gnl|canFam2|chr5 (13721301-13720956) | |
| 233-572, gnl|dasNov1|scaffold_93729 (5833-5513) | |
| 233-572, gnl|echTel1|scaffold_303413 (80665-81002) | |
| 233-572, gnl|hg17|chr11 (123106317-123106662) | |
| 233-572, gnl|Hg17|chr11 (123106767-123106431) | |
| 233-572, gnl|loxAfr1|scaffold_11701 (33363-33018) | |
| 233-572, gnl|mm7|chr9 (40137679-40137340) | |
| 233-572, gnl|Mm7|chr9 (40137233-40137569) | |
| 233-572, gnl|monDom2|scaffold_2 (112722771-112722438) | |
| 233-572, gnl|oryCun1|scaffold_143249 (14890-14545) | |
| 233-572, gnl|panTro1|chr9 (125147706-125148051) | |
| 233-572, gnl|rheMac2|chr14 (122093376-122093720) | |
| 233-572, gnl|rn3|chr8 (43167739-43167398) | |
| 233-572, gnl|xenTro1|scaffold_1098 (193190-192830) | |
| 314-497, gnl|bosTau2|chr13 (46206175-46206358) | |
| 314-497, gnl|canFam2|chr24 (27793270-27793767) | |
| 314-497, gnl|dasNov1|scaffold_2507 (103656-104125) | |
| 314-497, gnl|echTel1|scaffold_309798 (84835-85263) | |
| 314-497, gnl|hg17|chr20 (34005015-34005511) | |
| 314-497, gnl|Hg17|chr20 (34005317-34005134) | |
| 314-497, gnl|loxAfr1|scaffold_29083 (12644-13151) | |
| 314-497, gnl|mm7|chr2 (156052753-156053103) | |
| 314-497, gnl|Mm7|chr2 (156053014-156052831) | |
| 314-497, gnl|monDom2|scaffold_6 (11109423-11108930) | |
| 314-497, gnl|oryCun1|scaffold_143027 (25188-24754) | |
| 314-497, gnl|panTro1|chr21 (36225996-36226492) | |
| 314-497, gnl|rheMac2|chr10 (28569615-28569119) | |
| 314-497, gnl|rn3|chr3 (146616106-146616456) | |
| 903-1116, gnl|bosTau2|chr10 (8996695-8996482) | |
| 903-1116, gnl|Hg17|chr19 (42818500-42818287) | |
| 903-1116, gnl|Mm7|chr2 (127310126-127309913) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.0970026) |