Ss1.1-rpldo0107_n9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTTGCTGCGACGTTTGCCTCAGCTTCCTGCCGGCAGCGTCGTGGAGGGGCTGGCCCAG GTCGGAGAGCAAGCTGCTCCGCCAGCTCCTGTGGGCGTGCTACCTCGTCCCAGGCATCTG CCCACCCCAGTGACCAAGGCAGACAAGGTCCATCCGGCGCGAGGATCCCAAGTGCAGCAC AGCCCGGAGCGACCAGCCGCTGGACTCTTCTTCCCTTGAGAGTCAGAGGTCACCGTGATT CCACCTGCGGTGATCAGGGGTTTCTGCAGCTCTCAAGGCCCTCTGCAGGCGATCTGTTTT CTAAGAACGAAATGTGCAATAAAGCCCGTTCTTTGCCTACTTTTCAGCAGCCAGGAGATG TGGCACTGTTAGTGTCCCTCGGAGGCCTCGCGTCGCCTGTGGAGCAGTGCCCATCTTGCC CCGTCCTGTCGCCACCTGTTCTCAGGAACTTCACCCGTGCCCGAGTTTCCCTGGCACAGG CCGTGTAAGGTCCCTGGGCAGGCGCGTGGTCGGGTGTCCTCTTCTGATAAAACCCACCTG TGTTTACCACATGCCCTCTGGGCCTCAGCTCCCACTGCCTCGTGTCTACTCAAGCATAGA CCCTGGGCGGTGGTGGCCGTAATTGTGGCCTTATTAGCCGCCAGTGTCCATGCTGTCGCC CAAGTCACAACTGCCCTGTGTCTCAGAGCTCGGCTCTCCAGACCTGAACGGGCACCTCCC CCACCAGCTGACATTCATTTCAGAAGCTGCTCTTCTGGCCTTGAGCCTTGGGCTGTGCTT GCTCCATAGGTTGAGTTGGCAAAGTATGGGCCCCTCCTCCCCGGGGCCGGATTACACCCT CTGCTCAGCTCCAGTGTGTGAGGCTCTGGTCCTTCAGGAGGCGGCAGGGTGGCCCGAGGC ACAGGGCTCGGGGCTGGCTCCCGGGGGAGAGGCCTCGTCGTGCCTGCCGCCTCCACCTCC GCACCCTCCTCCCTCAGAGGGCTCTGGGCCAAATCAACAGCCCTTTGCGTGTCGCGTCTC CGCGGTGGAAGGGGCCTCCTCTGGCTTTGCAATAACGGACCTTCAGCTTATCCTGGAGGA GCAAGGACTCGGCACAGAATTCACTTTAAATGGGGCTAAAGGAGTGTCCCTCTATGAAAG AAAGTTGTTTTATTCTTCATTCTGACTTAACTGCAGTGCATTTGATGAAAGAAATATTTT CTACTTGGAGTCGAGGGCGAGACCTGAGTTCTCATCACTGTGATGTGTCGTGTCTGCCCT TGGATTGGACATCATTGCCCCTGGGTTCCTTCTGGGCTCCGCGGAGCACTCTTCATGTTC TAACAGTACCCAGACTTCAGGAGCCCAGACAGCCACCCAGTCAAAATCGCTTATGTTTTT TGCTTACGAACAAATGGTTGAGCATAACAATTGTATTCCTTCATACTAAATTAACTTGGG AAAAAATGTTTAGTTTCTGCATATTCAGAAACTGCAAAATAGGAAAGGGTCGGAATGGAA AATCCTCAGTGTACATAGTTCAAATCTTTGTTACATTTAAACTATATCCATGTATGTCTC TGTTTTGGACTCCTCTGCTAGTGTTACAGGTGGAAATAAACCATTAATTGGAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTTGCTGCGACGTTTGCCTCAGCTTCCTGCCGGCAGCGTCGTGGAGGGGCTGGCCCAG GTCGGAGAGCAAGCTGCTCCGCCAGCTCCTGTGGGCGTGCTACCTCGTCCCAGGCATCTG CCCACCCCAGTGACCAAGGCAGACAAGGTCCATCCGGCGCGAGGATCCCAAGTGCAGCAC AGCCCGGAGCGACCAGCCGCTGGACTCTTCTTCCCTTGAGAGTCAGAGGTCACCGTGATT CCACCTGCGGTGATCAGGGGTTTCTGCAGCTCTCAAGGCCCTCTGCAGGCGATCTGTTTT CTAAGAACGAAATGTGCAATAAAGCCCGTTCTTTGCCTACTTTTCAGCAGCCAGGAGATG TGGCACTGTTAGTGTCCCTCGGAGGCCTCGCGTCGCCTGTGGAGCAGTGCCCATCTTGCC CCGTCCTGTCGCCACCTGTTCTCAGGAACTTCACCCGTGCCCGAGTTTCCCTGGCACAGG CCGTGTAAGGTCCCTGGGCAGGCGCGTGGTCGGGTGTCCTCTTCTGATAAAACCCACCTG TGTTTACCACATGCCCTCTGGGCCTCAGCTCCCACTGCCTCGTGTCTACTCAAGCATAGA CCCTGGGCGGTGGTGGCCGTAATTGTGGCCTTATTAGCCGCCAGTGTCCATGCTGTCGCC CAAGTCACAACTGCCCTGTGTCTCAGAGCTCGGCTCTCCAGACCTGAACGGGCACCTCCC CCACCAGCTGACATTCATTTCAGAAGCTGCTCTTCTGGCCTTGAGCCTTGGGCTGTGCTT GCTCCATAGGTTGAGTTGGCAAAGTATGGGCCCCTCCTCCCCGGGGCCGGATTACACCCT CTGCTCAGCTCCAGTGTGTGAGGCTCTGGTCCTTCAGGAGGCGGCAGGGTGGCCCGAGGC ACAGGGCTCGGGGCTGGCTCCCGGGGGAGAGGCCTCGTCGTGCCTGCCGCCTCCACCTCC GCACCCTCCTCCCTCAGAGGGCTCTGGGCCAAATCAACAGCCCTTTGCGTGTCGCGTCTC CGCGGTGGAAGGGGCCTCCTCTGGCTTTGCAATAACGGACCTTCAGCTTATCCTGGAGGA GCAAGGACTCGGCACAGAATTCACTTTAAATGGGGCTAAAGGAGTGTCCCTCTATGAAAG AAAGTTGTTTTATTCTTCATTCTGACTTAACTGCAGTGCATTTGATGAAAGAAATATTTT CTACTTGGAGTCGAGGGCGAGACCTGAGTTCTCATCACTGTGATGTGTCGTGTCTGCCCT TGGATTGGACATCATTGCCCCTGGGTTCCTTCTGGGCTCCGCGGAGCACTCTTCATGTTC TAACAGTACCCAGACTTCAGGAGCCCAGACAGCCACCCAGTCAAAATCGCTTATGTTTTT TGCTTACGAACAAATGGTTGAGCATAACAATTGTATTCCTTCATACTAAATTAACTTGGG AAAAAATGTTTAGTTTCTGCATATTCAGAAACTGCAAAATAGGAAAGGGTCGGAATGGAA AATCCTCAGTGTACATAGTTCAAATCTTTGTTACATTTAAACTATATCCATGTATGTCTC TGTTTTGGACTCCTCTGCTAGTGTTACAGGTGGAAATAAACCATTAATTGGAAAAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1026-1136, + strand, RNAz p=0.872599 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1026-1136, + strand, RNAz p=0.872599 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_002938, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 14-1311, gnl|bosTau2|chr6 (65000088-65001424) | |
| 14-1311, gnl|Hg17|chr4 (2483106-2484451) | |
| 14-1311, gnl|Mm7|chr5 (33414282-33415637) | |
| 1315-1613, gnl|bosTau2|chr6 (65001447-65001755) | |
| 1315-1613, gnl|canFam2|chr3 (64542068-64541513) | |
| 1315-1613, gnl|canFam2|chr3 (64541513-64541781) | |
| 1315-1613, gnl|canFam2|chr3 (64541519-64541781) | |
| 1315-1613, gnl|dasNov1|scaffold_69055 (1511-1793) | |
| 1315-1613, gnl|dasNov1|scaffold_72736 (4605-4013) | |
| 1315-1613, gnl|dasNov1|scaffold_72736 (4020-4315) | |
| 1315-1613, gnl|echTel1|scaffold_279290 (11828-12380) | |
| 1315-1613, gnl|echTel1|scaffold_279290 (12380-12106) | |
| 1315-1613, gnl|echTel1|scaffold_279290 (12374-12103) | |
| 1315-1613, gnl|galGal2|chr4 (82877567-82877866) | |
| 1315-1613, gnl|hg17|chr1 (227466090-227466700) | |
| 1315-1613, gnl|Hg17|chr4 (2484454-2484810) | |
| 1315-1613, gnl|hg17|chr4_random (778468-778760) | |
| 1315-1613, gnl|hg17|chrX (56437493-56437773) | |
| 1315-1613, gnl|loxAfr1|scaffold_46846 (1346-793) | |
| 1315-1613, gnl|loxAfr1|scaffold_46846 (791-1043) | |
| 1315-1613, gnl|loxAfr1|scaffold_46846 (797-1046) | |
| 1315-1613, gnl|mm7|chr10 (6352779-6352180) | |
| 1315-1613, gnl|mm7|chr5 (33415994-33415724) | |
| 1315-1613, gnl|mm7|chr5 (33415985-33415723) | |
| 1315-1613, gnl|Mm7|chr5 (33415656-33415988) | |
| 1315-1613, gnl|monDom2|scaffold_10 (42059043-42058401) | |
| 1315-1613, gnl|monDom2|scaffold_10 (42058397-42058730) | |
| 1315-1613, gnl|oryCun1|scaffold_203954 (5589-6172) | |
| 1315-1613, gnl|oryCun1|scaffold_203954 (6173-5899) | |
| 1315-1613, gnl|oryCun1|scaffold_203954 (6167-5898) | |
| 1315-1613, gnl|panTro1|chr1 (211317555-211318167) | |
| 1315-1613, gnl|panTro1|chr3 (2596300-2596012) | |
| 1315-1613, gnl|panTro1|chr3 (2596281-2596011) | |
| 1315-1613, gnl|rheMac2|chr1 (1468818-1468220) | |
| 1315-1613, gnl|rheMac2|chr1 (1468219-1468516) | |
| 1315-1613, gnl|rheMac2|chrX (54975602-54975880) | |
| 1315-1613, gnl|rn3|chr14 (82093068-82092486) | |
| 1315-1613, gnl|rn3|chr14 (82092485-82092757) | |
| 1315-1613, gnl|rn3|chr14 (82092491-82092758) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-1311, gnl|bosTau2|chr6 (65000088-65001424) | |
| 14-1311, gnl|Hg17|chr4 (2483106-2484451) | |
| 14-1311, gnl|Mm7|chr5 (33414282-33415637) | |
| 1315-1613, gnl|bosTau2|chr6 (65001447-65001755) | |
| 1315-1613, gnl|canFam2|chr3 (64542068-64541513) | |
| 1315-1613, gnl|canFam2|chr3 (64541513-64541781) | |
| 1315-1613, gnl|canFam2|chr3 (64541519-64541781) | |
| 1315-1613, gnl|dasNov1|scaffold_69055 (1511-1793) | |
| 1315-1613, gnl|dasNov1|scaffold_72736 (4605-4013) | |
| 1315-1613, gnl|dasNov1|scaffold_72736 (4020-4315) | |
| 1315-1613, gnl|echTel1|scaffold_279290 (11828-12380) | |
| 1315-1613, gnl|echTel1|scaffold_279290 (12380-12106) | |
| 1315-1613, gnl|echTel1|scaffold_279290 (12374-12103) | |
| 1315-1613, gnl|galGal2|chr4 (82877567-82877866) | |
| 1315-1613, gnl|hg17|chr1 (227466090-227466700) | |
| 1315-1613, gnl|Hg17|chr4 (2484454-2484810) | |
| 1315-1613, gnl|hg17|chr4_random (778468-778760) | |
| 1315-1613, gnl|hg17|chrX (56437493-56437773) | |
| 1315-1613, gnl|loxAfr1|scaffold_46846 (1346-793) | |
| 1315-1613, gnl|loxAfr1|scaffold_46846 (791-1043) | |
| 1315-1613, gnl|loxAfr1|scaffold_46846 (797-1046) | |
| 1315-1613, gnl|mm7|chr10 (6352779-6352180) | |
| 1315-1613, gnl|mm7|chr5 (33415994-33415724) | |
| 1315-1613, gnl|mm7|chr5 (33415985-33415723) | |
| 1315-1613, gnl|Mm7|chr5 (33415656-33415988) | |
| 1315-1613, gnl|monDom2|scaffold_10 (42059043-42058401) | |
| 1315-1613, gnl|monDom2|scaffold_10 (42058397-42058730) | |
| 1315-1613, gnl|oryCun1|scaffold_203954 (5589-6172) | |
| 1315-1613, gnl|oryCun1|scaffold_203954 (6173-5899) | |
| 1315-1613, gnl|oryCun1|scaffold_203954 (6167-5898) | |
| 1315-1613, gnl|panTro1|chr1 (211317555-211318167) | |
| 1315-1613, gnl|panTro1|chr3 (2596300-2596012) | |
| 1315-1613, gnl|panTro1|chr3 (2596281-2596011) | |
| 1315-1613, gnl|rheMac2|chr1 (1468818-1468220) | |
| 1315-1613, gnl|rheMac2|chr1 (1468219-1468516) | |
| 1315-1613, gnl|rheMac2|chrX (54975602-54975880) | |
| 1315-1613, gnl|rn3|chr14 (82093068-82092486) | |
| 1315-1613, gnl|rn3|chr14 (82092485-82092757) | |
| 1315-1613, gnl|rn3|chr14 (82092491-82092758) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| hea (0.408998) | |
| elu (0.385356) | |
| cje (0.330469) | |
| csp (0.322373) | |
| fat (0.294855) | |
| cga (0.279096) | |
| che (0.272628) | |
| cov (0.264306) | |
| pgl (0.236967) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sto (0.179824) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.408998) | |
| elu (0.385356) | |
| cje (0.330469) | |
| csp (0.322373) | |
| fat (0.294855) | |
| cga (0.279096) | |
| che (0.272628) | |
| cov (0.264306) | |
| pgl (0.236967) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sto (0.179824) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |