Ss1.1-rpldo0108_a4.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTATGGGCCCCTGGCTAATGGAGCCACCAGTGTTTTGTTTGAGGGGATTCCCACACAC CCGGACGTGAGCCGCCTGTGGAGCGTCGTGGACAAGTACAAGGTGACCAAGTTTTACACG GCACCCACGGCCATCCGCCTGCTCATGAAGTCTGGAGATGGGCCTGTTACCAAGCATAGC CGGGCATCCTTAAAGGTGCTAGGCACAGTGGGCGAACCCATCAACCCTGAGGCCTGGCTG TGGTACCACCGGGTGGTAGGTGACAACCGCTGCCCCATTGTGGACACCTTCTGGCAGACA GAGACAGGTGGCCACATGCTGACCCCCCTCCCTGGTGCCACACGCACAAAGCCTGGTTCT GCTACCTTTCCATTCTTTGGTGTAGCTCCTGCAATCCTGAATGAGGCTGGGGAAGAGTTA GAAGGTGAAGCTGAAGGTTATCTGGTGTTCAAGCAGCCCTGGCCAGGGATCATGCGCACA GTCTACGGGAACCATGAACGCTTTGAAGCCACCTACTTTAAGAAGTTTCCCGGGTACTAT GTGACAGGAGATGGCTGCCGACGGGACAAGGATGGCTATTACTGGATCACTGGAAGGATT GATGACATGCTAAATGTATCCGGACACCTGCTGAGCACAGCAGAGGTAGAGTCGGCACTT GTGGAACACCAGGCTATCGCAGAGGCAGCCGTGGTTGGCCACCCTCATCCTGTGAAGGGC GAATGCCTCTACTGCTTTGTTACCCTGCGTGATGGCCACATCTTCAGCCCCACCCTCACT GAAGAGCTCAAGAAGCAGATTAGAGAAAAGATTGGCCCCATTGCCACACCGGATTTCATC CAGAACGCACCTGGTTTGCCTAAAACCCGCTCAGGGAAAATCATGAGGCGGGTGCTTCGG AAGATCGCTCAGAATGACCATGACCTGGGGGACACGTCCACTGTGGCTGACCCATCCGTC ATCACCCAGCTCTTCAGCCACCGCTGCCAGACCATCCAATGAATAAGACCCTGCCCTTTA CCCAGGATTCCCTTTGCTTTGCTTTCCAAAGTTTTGCCCATCCTCCCTGCCCCCACCCAG CACTGAGGGCCAGTGCTGACCCCCACCACCTCCCTTGACCAGCTGTCTGGGACTGAGGAT CAACTTTGCCTCTGGGTGGAGGCAACTTCTTGCAACTACCAGGCAAGGTCCAGGTTAACC TCGGGCTACTGTGCCCCTAGACTGCAAAGAGCCCTTGGAGCCCAAAACAGGGACCTGAAG GCCACGTCCCAACCTAAGTTAAGTGTTCAGTGGGCAAGTGAGGGCATAGACTGAAGCAGG GAAGCAACTCTATAATCCTATGTCAGCTCTCTCAGGAAATACCACTACTTATCTTGGGCA TGCACTTGCCCTTGGAAATGCCTGTTTGTGAGTCTTGGAACAATTGATTATTATTTTTTT AAACACTTTGCTGCTTCTGTTTTGGGTCTGAATTTCTTTTTGCGCCAGATGGCAGTGCTT GTCTGCCATTTGTTCCAGGGGCTGGGCAGGCAGGCTCAGTTTCCAGAGGGTTCTCAGATC ACCTGTGTCTTTGTAGGAGTAAATGTGTTATATTTACTAGGGCCAGAGGAGCTTACTTTT CTTGTCCTCTGTTCCCACCCTCCCCTGAACAGAGTCTCGCCCAGAAGCGACATTCTCAGA TGAAGCTCCCTTTTCTTGCCCCAGTCCTACTCAAGCCCTGTGGTTGTAGGAATAAAGTCT GTGACCTCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTATGGGCCCCTGGCTAATGGAGCCACCAGTGTTTTGTTTGAGGGGATTCCCACACAC CCGGACGTGAGCCGCCTGTGGAGCGTCGTGGACAAGTACAAGGTGACCAAGTTTTACACG GCACCCACGGCCATCCGCCTGCTCATGAAGTCTGGAGATGGGCCTGTTACCAAGCATAGC CGGGCATCCTTAAAGGTGCTAGGCACAGTGGGCGAACCCATCAACCCTGAGGCCTGGCTG TGGTACCACCGGGTGGTAGGTGACAACCGCTGCCCCATTGTGGACACCTTCTGGCAGACA GAGACAGGTGGCCACATGCTGACCCCCCTCCCTGGTGCCACACGCACAAAGCCTGGTTCT GCTACCTTTCCATTCTTTGGTGTAGCTCCTGCAATCCTGAATGAGGCTGGGGAAGAGTTA GAAGGTGAAGCTGAAGGTTATCTGGTGTTCAAGCAGCCCTGGCCAGGGATCATGCGCACA GTCTACGGGAACCATGAACGCTTTGAAGCCACCTACTTTAAGAAGTTTCCCGGGTACTAT GTGACAGGAGATGGCTGCCGACGGGACAAGGATGGCTATTACTGGATCACTGGAAGGATT GATGACATGCTAAATGTATCCGGACACCTGCTGAGCACAGCAGAGGTAGAGTCGGCACTT GTGGAACACCAGGCTATCGCAGAGGCAGCCGTGGTTGGCCACCCTCATCCTGTGAAGGGC GAATGCCTCTACTGCTTTGTTACCCTGCGTGATGGCCACATCTTCAGCCCCACCCTCACT GAAGAGCTCAAGAAGCAGATTAGAGAAAAGATTGGCCCCATTGCCACACCGGATTTCATC CAGAACGCACCTGGTTTGCCTAAAACCCGCTCAGGGAAAATCATGAGGCGGGTGCTTCGG AAGATCGCTCAGAATGACCATGACCTGGGGGACACGTCCACTGTGGCTGACCCATCCGTC ATCACCCAGCTCTTCAGCCACCGCTGCCAGACCATCCAATGAATAAGACCCTGCCCTTTA CCCAGGATTCCCTTTGCTTTGCTTTCCAAAGTTTTGCCCATCCTCCCTGCCCCCACCCAG CACTGAGGGCCAGTGCTGACCCCCACCACCTCCCTTGACCAGCTGTCTGGGACTGAGGAT CAACTTTGCCTCTGGGTGGAGGCAACTTCTTGCAACTACCAGGCAAGGTCCAGGTTAACC TCGGGCTACTGTGCCCCTAGACTGCAAAGAGCCCTTGGAGCCCAAAACAGGGACCTGAAG GCCACGTCCCAACCTAAGTTAAGTGTTCAGTGGGCAAGTGAGGGCATAGACTGAAGCAGG GAAGCAACTCTATAATCCTATGTCAGCTCTCTCAGGAAATACCACTACTTATCTTGGGCA TGCACTTGCCCTTGGAAATGCCTGTTTGTGAGTCTTGGAACAATTGATTATTATTTTTTT AAACACTTTGCTGCTTCTGTTTTGGGTCTGAATTTCTTTTTGCGCCAGATGGCAGTGCTT GTCTGCCATTTGTTCCAGGGGCTGGGCAGGCAGGCTCAGTTTCCAGAGGGTTCTCAGATC ACCTGTGTCTTTGTAGGAGTAAATGTGTTATATTTACTAGGGCCAGAGGAGCTTACTTTT CTTGTCCTCTGTTCCCACCCTCCCCTGAACAGAGTCTCGCCCAGAAGCGACATTCTCAGA TGAAGCTCCCTTTTCTTGCCCCAGTCCTACTCAAGCCCTGTGGTTGTAGGAATAAAGTCT GTGACCTCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 170-287, + strand, RNAz p=0.6719 | |
| 622-780, - strand, RNAz p=0.989055 | |
| 1030-1216, - strand, RNAz p=0.948916 | |
| 1456-1574, + strand, RNAz p=0.96701 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 170-287, + strand, RNAz p=0.6719 | |
| 622-780, - strand, RNAz p=0.989055 | |
| 1030-1216, - strand, RNAz p=0.948916 | |
| 1456-1574, + strand, RNAz p=0.96701 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK092281, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 170-307, gnl|bosTau2|chr13 (46624129-46623991) | |
| 170-307, gnl|Hg17|chr20 (32972789-32972927) | |
| 170-307, gnl|Mm7|chr2 (155297950-155298088) | |
| 444-554, gnl|bosTau2|chr13 (46621966-46621856) | |
| 444-554, gnl|canFam2|chr24 (26941017-26941212) | |
| 444-554, gnl|danRer3|chr23 (5295921-5296040) | |
| 444-554, gnl|dasNov1|scaffold_16043 (7096-6918) | |
| 444-554, gnl|echTel1|scaffold_309010 (120216-120409) | |
| 444-554, gnl|fr1|chrUn (194907326-194907166) | |
| 444-554, gnl|galGal2|chr20 (2500600-2500429) | |
| 444-554, gnl|hg17|chr20 (32974742-32974935) | |
| 444-554, gnl|Hg17|chr20 (32974786-32974896) | |
| 444-554, gnl|loxAfr1|scaffold_57357 (9272-9460) | |
| 444-554, gnl|mm7|chr2 (155299404-155299596) | |
| 444-554, gnl|Mm7|chr2 (155299448-155299558) | |
| 444-554, gnl|monDom2|scaffold_6 (12082901-12082723) | |
| 444-554, gnl|oryCun1|scaffold_95730 (4806-4999) | |
| 444-554, gnl|panTro1|chr21_random (9948803-9948610) | |
| 444-554, gnl|rheMac2|chr10 (29636350-29636157) | |
| 444-554, gnl|rn3|chr3 (145957603-145957796) | |
| 444-554, gnl|tetNig1|chrUn_random (30280701-30280817) | |
| 444-554, gnl|xenTro1|scaffold_35 (3249954-3249748) | |
| 622-802, gnl|bosTau2|chr13 (46620045-46619865) | |
| 622-802, gnl|Hg17|chr20 (32977568-32977748) | |
| 622-802, gnl|Mm7|chr2 (155301887-155302067) | |
| 872-1749, gnl|bosTau2|chr13 (46618863-46617992) | |
| 872-1749, gnl|Hg17|chr20 (32978548-32979422) | |
| 872-1749, gnl|Mm7|chr2 (155302808-155303595) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-307, gnl|bosTau2|chr13 (46624129-46623991) | |
| 170-307, gnl|Hg17|chr20 (32972789-32972927) | |
| 170-307, gnl|Mm7|chr2 (155297950-155298088) | |
| 444-554, gnl|bosTau2|chr13 (46621966-46621856) | |
| 444-554, gnl|canFam2|chr24 (26941017-26941212) | |
| 444-554, gnl|danRer3|chr23 (5295921-5296040) | |
| 444-554, gnl|dasNov1|scaffold_16043 (7096-6918) | |
| 444-554, gnl|echTel1|scaffold_309010 (120216-120409) | |
| 444-554, gnl|fr1|chrUn (194907326-194907166) | |
| 444-554, gnl|galGal2|chr20 (2500600-2500429) | |
| 444-554, gnl|hg17|chr20 (32974742-32974935) | |
| 444-554, gnl|Hg17|chr20 (32974786-32974896) | |
| 444-554, gnl|loxAfr1|scaffold_57357 (9272-9460) | |
| 444-554, gnl|mm7|chr2 (155299404-155299596) | |
| 444-554, gnl|Mm7|chr2 (155299448-155299558) | |
| 444-554, gnl|monDom2|scaffold_6 (12082901-12082723) | |
| 444-554, gnl|oryCun1|scaffold_95730 (4806-4999) | |
| 444-554, gnl|panTro1|chr21_random (9948803-9948610) | |
| 444-554, gnl|rheMac2|chr10 (29636350-29636157) | |
| 444-554, gnl|rn3|chr3 (145957603-145957796) | |
| 444-554, gnl|tetNig1|chrUn_random (30280701-30280817) | |
| 444-554, gnl|xenTro1|scaffold_35 (3249954-3249748) | |
| 622-802, gnl|bosTau2|chr13 (46620045-46619865) | |
| 622-802, gnl|Hg17|chr20 (32977568-32977748) | |
| 622-802, gnl|Mm7|chr2 (155301887-155302067) | |
| 872-1749, gnl|bosTau2|chr13 (46618863-46617992) | |
| 872-1749, gnl|Hg17|chr20 (32978548-32979422) | |
| 872-1749, gnl|Mm7|chr2 (155302808-155303595) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cli (0.458435) | |
| cga (0.279096) | |
| col (0.195008) | |
| sto (0.179824) | |
| rec (0.17307) | |
| nje (0.16592) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) | |
| cga (0.279096) | |
| col (0.195008) | |
| sto (0.179824) | |
| rec (0.17307) | |
| nje (0.16592) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |