Non-Coding RNA Search

Ss1.1-rpldo0108_d19.5

Sequence:


               
               AAAGGTTGGAAGTAAATATCATTAAAAATTTCCAGAGGCTAGCACTTGGATTCTAACAAA
TACTCCATTTTATTATCCATTTGTTCTGTAATATTTAATTTTATATATATTTTTTTAATT
GGCAAATCATAAGCCAGCTGTGTAACAGTATCAAATATAGAATTTCATAGAAAGCTTTGA
CCTGAGCTCTTTGTTACAAAGCCTGGAGAAAGTTACGCTCAGAAAACAATTTGCTGATGT
ATAATTAGTTATCTTTTTATAGTAGGAATGTATGTCCTGTGCCAGAGGTGGTCTTTCTGG
TACTAATTTTGAGACCAAGGATAAAAGGATAGTTGTGGAAGGCACAGCATGGCAGTGGTT
GGCTGAGGGATACTCAGCCTAAGCTTGACCTAACTGCATTTTCCTCACACCTACTTTCAA
AGGCATTTAGGTATTTGAAGGCTTATTTCCCACCTAGTTACTGTTTCTGGCTTTTCTCTC
TCTCTCTTTTTTTTTTTTTTTTTGCGGGAATGGGGATCAAACAACCAGAAGAAGACAAGC
ATTTTGATCAAGCAATGTTTGCTTTCAAATTTCAGTTATTTTGAAGGAAATCAGAAATAC
TAAGTACTTTGACATCCTTTTTTCTCTTTAAGCTTTTCACACATGTATACACACACACAC
ACACACACACACACACACACTCTTGTTCAGAAGTTGTGTTGTGGCATTGGACTGGGAATC
ATTTTTCCCTCTTGGAAATGATTCTTAACTCTGGGATTTTAGAAGGTTGGAAATATTTTT
TCAAGAGAACAATGGTACTCAAAATAATGAAAGGTGGTCCTACTTTTTCTGTATTTTATT
ACTTTAAATTTTTTAATTTTTCCAAGAACTGCAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGGTTGGAAGTAAATATCATTAAAAATTTCCAGAGGCTAGCACTTGGATTCTAACAAA
TACTCCATTTTATTATCCATTTGTTCTGTAATATTTAATTTTATATATATTTTTTTAATT
GGCAAATCATAAGCCAGCTGTGTAACAGTATCAAATATAGAATTTCATAGAAAGCTTTGA
CCTGAGCTCTTTGTTACAAAGCCTGGAGAAAGTTACGCTCAGAAAACAATTTGCTGATGT
ATAATTAGTTATCTTTTTATAGTAGGAATGTATGTCCTGTGCCAGAGGTGGTCTTTCTGG
TACTAATTTTGAGACCAAGGATAAAAGGATAGTTGTGGAAGGCACAGCATGGCAGTGGTT
GGCTGAGGGATACTCAGCCTAAGCTTGACCTAACTGCATTTTCCTCACACCTACTTTCAA
AGGCATTTAGGTATTTGAAGGCTTATTTCCCACCTAGTTACTGTTTCTGGCTTTTCTCTC
TCTCTCTTTTTTTTTTTTTTTTTGCGGGAATGGGGATCAAACAACCAGAAGAAGACAAGC
ATTTTGATCAAGCAATGTTTGCTTTCAAATTTCAGTTATTTTGAAGGAAATCAGAAATAC
TAAGTACTTTGACATCCTTTTTTCTCTTTAAGCTTTTCACACATGTATACACACACACAC
ACACACACACACACACACACTCTTGTTCAGAAGTTGTGTTGTGGCATTGGACTGGGAATC
ATTTTTCCCTCTTGGAAATGATTCTTAACTCTGGGATTTTAGAAGGTTGGAAATATTTTT
TCAAGAGAACAATGGTACTCAAAATAATGAAAGGTGGTCCTACTTTTTCTGTATTTTATT
ACTTTAAATTTTTTAATTTTTCCAAGAACTGCAAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               231-344, - strand, RNAz p=0.591368

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-344, - strand, RNAz p=0.591368

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-876, gnl|bosTau2|chr19 (41704675-41705514)
               

               
               10-876, gnl|Hg17|chr17 (42551585-42550654)
               

               
               10-876, gnl|Mm7|chr11 (104612989-104612147)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-876, gnl|bosTau2|chr19 (41704675-41705514)
               

               
               10-876, gnl|Hg17|chr17 (42551585-42550654)
               

               
               10-876, gnl|Mm7|chr11 (104612989-104612147)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               spl (0.286369)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               eye (0.170503)
               

               
               lyg (0.133103)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               eye (0.170503)
               

               
               lyg (0.133103)
               

               
               ldo (0.0970026)

	10-876, gnl\|bosTau2\|chr19 (41704675-41705514)
	10-876, gnl\|Hg17\|chr17 (42551585-42550654)
	10-876, gnl\|Mm7\|chr11 (104612989-104612147)

	spl (0.286369)
	mgp (0.230681)
	tes (0.207814)
	eye (0.170503)
	lyg (0.133103)
	ldo (0.0970026)