Ss1.1-rpldo0108_d8.5
|
CTATTCATCAGCCTCTTGGAGCCGGACTCTAAGCGTCATTGGCAGACATGTGCTGTTGGT
CCAGTTTGTGCAGCTGGAAAGAAAGGGCCTCGCTAGTAGCTGTGCAGCGGTTACTAGTGA
AGCTGATCATACGGAACCAGTTTACTCCAGGTGCTCAGCGACTCAAACCCTCGCCTTTGT
AAGTATCTCAGAAGCGAGAACTGTGATAAACTGGGCTTAGAAGAGGGTCACGATGGACAA
CACACATCCAGATTCAGCACGATTGAAAGCGGGCCTGGAGCTCTAAGACAGAGCAGTGCA
AGCCACACCTGTCTTTCCCGAAGACAGGTGGAAGTTTGGCCAGGTGGGAGAAATGATTGG
AAAGAGAGGCCAAGAACAATGGACTGAGTGGACTTGTCTCCCAGTTGCATTTGATGGGTG
CCTATCAATGTAGGTTTGGCAAATGTTGTTTAGAGACCAGACTGGAAGCTTGAAACCCCC
AGCTCGCTAAGCCCTTTTCCTTTCTAGTACGGGGGTCGGGAAGGCTCCTCAGTTCCCATA
GCTCCATGGTACGGGCTGTGGACCACTTGCTGCCTGGCAGAAATCACCGTGTCCACGAGA
AATGGACTGGTCCTGCAGCCCGAGATGAGCCAACCACGCACAGCCGTCTTTGGAAGCTGA
GGACCGAAGAAGGTTGTGAGGGGTGCTGTCGTTCTGTTCTGAAGCCCAGCCGTTTAGAGA
TGTCATCCTTCGCCTCCAAATTAAAAACGACAATAACAGCAACATAGATCGTAGCATCTG
CCCTGCCTGTGGTTAGTCAGTGGCTTGCGATTATGTGCAAACTATATTCATAGGAAACAT
TTTTAGGATTACACTGTAGTTGATAAGGTATATAGGATTGCTTACAACATCGAAGGTCTT
TATCTTCAAGTGACGTGTACCTGTGCATGTCTGGGGACTTGGCCCTTCGGACGAGAGGCC
CTCTGGGTAATGTCGCTTGTGCGGGGTGGTGTCCGTGCTCACACGCCACAATCCTATAAA
GGACATGAAGCCATGATAACCTGACAGCAGTGTCTCCATAGTTGTGTTGTTTACAATACT
CTACACGTGGGTCCCTGTTACCCTGTAGCTAAACTGCTGCCCTTCGAGGCCTTTCAGTTC
CTCTTCTGTCGTGTCCCTTCTTACACGAGCTTGAATTTTCTAACTTGTTTTTATTTTGAA
GACTTTTAAAATCGACATTTTCAATAAATAAGAATAACAATGCTTTATAAAATAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTATTCATCAGCCTCTTGGAGCCGGACTCTAAGCGTCATTGGCAGACATGTGCTGTTGGT
CCAGTTTGTGCAGCTGGAAAGAAAGGGCCTCGCTAGTAGCTGTGCAGCGGTTACTAGTGA
AGCTGATCATACGGAACCAGTTTACTCCAGGTGCTCAGCGACTCAAACCCTCGCCTTTGT
AAGTATCTCAGAAGCGAGAACTGTGATAAACTGGGCTTAGAAGAGGGTCACGATGGACAA
CACACATCCAGATTCAGCACGATTGAAAGCGGGCCTGGAGCTCTAAGACAGAGCAGTGCA
AGCCACACCTGTCTTTCCCGAAGACAGGTGGAAGTTTGGCCAGGTGGGAGAAATGATTGG
AAAGAGAGGCCAAGAACAATGGACTGAGTGGACTTGTCTCCCAGTTGCATTTGATGGGTG
CCTATCAATGTAGGTTTGGCAAATGTTGTTTAGAGACCAGACTGGAAGCTTGAAACCCCC
AGCTCGCTAAGCCCTTTTCCTTTCTAGTACGGGGGTCGGGAAGGCTCCTCAGTTCCCATA
GCTCCATGGTACGGGCTGTGGACCACTTGCTGCCTGGCAGAAATCACCGTGTCCACGAGA
AATGGACTGGTCCTGCAGCCCGAGATGAGCCAACCACGCACAGCCGTCTTTGGAAGCTGA
GGACCGAAGAAGGTTGTGAGGGGTGCTGTCGTTCTGTTCTGAAGCCCAGCCGTTTAGAGA
TGTCATCCTTCGCCTCCAAATTAAAAACGACAATAACAGCAACATAGATCGTAGCATCTG
CCCTGCCTGTGGTTAGTCAGTGGCTTGCGATTATGTGCAAACTATATTCATAGGAAACAT
TTTTAGGATTACACTGTAGTTGATAAGGTATATAGGATTGCTTACAACATCGAAGGTCTT
TATCTTCAAGTGACGTGTACCTGTGCATGTCTGGGGACTTGGCCCTTCGGACGAGAGGCC
CTCTGGGTAATGTCGCTTGTGCGGGGTGGTGTCCGTGCTCACACGCCACAATCCTATAAA
GGACATGAAGCCATGATAACCTGACAGCAGTGTCTCCATAGTTGTGTTGTTTACAATACT
CTACACGTGGGTCCCTGTTACCCTGTAGCTAAACTGCTGCCCTTCGAGGCCTTTCAGTTC
CTCTTCTGTCGTGTCCCTTCTTACACGAGCTTGAATTTTCTAACTTGTTTTTATTTTGAA
GACTTTTAAAATCGACATTTTCAATAAATAAGAATAACAATGCTTTATAAAATAAAAAAA |
|
2-269, gnl|bosTau2|chrX (4373530-4373258) |
|
2-269, gnl|canFam2|chrX (110101492-110101854) |
|
2-269, gnl|dasNov1|scaffold_4093 (87782-88159) |
|
2-269, gnl|echTel1|scaffold_299415 (6193-6565) |
|
2-269, gnl|hg17|chrX (135474198-135474539) |
|
2-269, gnl|Hg17|chrX (135474623-135474379) |
|
2-269, gnl|mm7|chrX (52712950-52713294) |
|
2-269, gnl|Mm7|chrX (52713345-52713113) |
|
2-269, gnl|rheMac2|chrX (134734588-134734925) |
|
2-269, gnl|rn3|chrX (142018538-142018875) |
| |
|
297-1255, gnl|bosTau2|chrX (4373256-4372299) |
|
297-1255, gnl|Hg17|chrX (135474362-135473226) |
|
297-1255, gnl|Mm7|chrX (52713111-52712192) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-269, gnl|bosTau2|chrX (4373530-4373258) |
|
2-269, gnl|canFam2|chrX (110101492-110101854) |
|
2-269, gnl|dasNov1|scaffold_4093 (87782-88159) |
|
2-269, gnl|echTel1|scaffold_299415 (6193-6565) |
|
2-269, gnl|hg17|chrX (135474198-135474539) |
|
2-269, gnl|Hg17|chrX (135474623-135474379) |
|
2-269, gnl|mm7|chrX (52712950-52713294) |
|
2-269, gnl|Mm7|chrX (52713345-52713113) |
|
2-269, gnl|rheMac2|chrX (134734588-134734925) |
|
2-269, gnl|rn3|chrX (142018538-142018875) |
| |
|
297-1255, gnl|bosTau2|chrX (4373256-4372299) |
|
297-1255, gnl|Hg17|chrX (135474362-135473226) |
|
297-1255, gnl|Mm7|chrX (52713111-52712192) |
|
vin (0.665115) |
|
hea (0.408998) |
|
che (0.408942) |
|
ssp (0.406559) |
|
ste (0.405625) |
|
cje (0.330469) |
|
fat (0.294855) |
|
spl (0.286369) |
|
spc (0.226732) |
|
mas (0.210305) |
|
tes (0.207814) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
fty (0.17584) |
|
sin (0.174948) |
|
eye (0.170503) |
|
cki (0.165235) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
ova (0.129132) |
|
ese (0.126502) |
|
cly (0.120642) |
|
med (0.116252) |
|
vin (0.665115) |
|
hea (0.408998) |
|
che (0.408942) |
|
ssp (0.406559) |
|
ste (0.405625) |
|
cje (0.330469) |
|
fat (0.294855) |
|
spl (0.286369) |
|
spc (0.226732) |
|
mas (0.210305) |
|
tes (0.207814) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
cmu (0.186393) |
|
gul (0.177588) |
|
fty (0.17584) |
|
sin (0.174948) |
|
eye (0.170503) |
|
cki (0.165235) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
ova (0.129132) |
|
ese (0.126502) |
|
cly (0.120642) |
|
med (0.116252) |
