Non-Coding RNA Search

Ss1.1-rpldo0108_f21.5

Sequence:


               
               CCCTCCTCCTCCCTCCTCCTCCGGGGNAAAGCTGCCACTTCTAGCTGCCCTGCTTCTTCT
TTAAAGGGTGACTTGCCCTGCAACAGATCGCTGCTCCAGCCTGCTCCCGCCTCGGGCTGT
CGGCGCTCCCGCCCGTGCCCTGTAACTTCTACCCCAGGAACGCGTCCCCAGATGGAGAGC
AAAGCCCTGCTCCTAGTGGCTCTGAGCGTGTGGCTTCAGAGTCTGATCGTCTCCCGCGAA
GGGTTGGCCACCGCCGACAGAATTTCAGGAGGAAGAGATTTTACAGACATCGAAAGTAAA
TTTGCTCTCAGGACTCCTGAAGACACAGTTGAGGACACTTGCCATCTCATTCCTGGAGTG
ACAGAATCTGTGGCTAACTGTCATTTCAACCATAGCAGCAAAACCTTTGTGGTGATCCAT
GGCTGGACGGTGACAGGAATGTATGAAAGTTGGGTCCCCAAACTTGTGGCTGCCCTATAC
AAGAGGGAACCAGATTCCAACGTCATTGTGGTGGACTGGCTGTCTCGGGCCCAGCAGCAT
TATCCAATATCTGCGGGATACACCAAGCTGGTGGGACAGGATGTGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCTCCTCCCTCCTCCTCCGGGGNAAAGCTGCCACTTCTAGCTGCCCTGCTTCTTCT
TTAAAGGGTGACTTGCCCTGCAACAGATCGCTGCTCCAGCCTGCTCCCGCCTCGGGCTGT
CGGCGCTCCCGCCCGTGCCCTGTAACTTCTACCCCAGGAACGCGTCCCCAGATGGAGAGC
AAAGCCCTGCTCCTAGTGGCTCTGAGCGTGTGGCTTCAGAGTCTGATCGTCTCCCGCGAA
GGGTTGGCCACCGCCGACAGAATTTCAGGAGGAAGAGATTTTACAGACATCGAAAGTAAA
TTTGCTCTCAGGACTCCTGAAGACACAGTTGAGGACACTTGCCATCTCATTCCTGGAGTG
ACAGAATCTGTGGCTAACTGTCATTTCAACCATAGCAGCAAAACCTTTGTGGTGATCCAT
GGCTGGACGGTGACAGGAATGTATGAAAGTTGGGTCCCCAAACTTGTGGCTGCCCTATAC
AAGAGGGAACCAGATTCCAACGTCATTGTGGTGGACTGGCTGTCTCGGGCCCAGCAGCAT
TATCCAATATCTGCGGGATACACCAAGCTGGTGGGACAGGATGTGGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q866F3_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q866F3_BOVIN

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               2-260, gnl|bosTau2|chr8 (35866289-35866562)
               

               
               2-260, gnl|canFam2|chr25 (40095700-40095497)
               

               
               2-260, gnl|dasNov1|scaffold_15837 (51408-51680)
               

               
               2-260, gnl|echTel1|scaffold_289928 (50659-50342)
               

               
               2-260, gnl|hg17|chr8 (19841003-19841280)
               

               
               2-260, gnl|Hg17|chr8 (19841057-19841320)
               

               
               2-260, gnl|loxAfr1|scaffold_25358 (13352-13072)
               

               
               2-260, gnl|mm7|chr8 (67335272-67335559)
               

               
               2-260, gnl|Mm7|chr8 (67335328-67335599)
               

               
               2-260, gnl|monDom2|scaffold_1 (76737746-76737522)
               

               
               2-260, gnl|oryCun1|scaffold_214778 (62174-61863)
               

               
               2-260, gnl|rheMac2|chr8 (19837813-19838090)
               

               
               2-260, gnl|rn3|chr16 (22556963-22556668)
               


               
               262-431, gnl|bosTau2|chr8 (35872577-35872746)
               

               
               262-431, gnl|Hg17|chr8 (19849973-19850133)
               

               
               262-431, gnl|Mm7|chr8 (67342196-67342363)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-260, gnl|bosTau2|chr8 (35866289-35866562)
               

               
               2-260, gnl|canFam2|chr25 (40095700-40095497)
               

               
               2-260, gnl|dasNov1|scaffold_15837 (51408-51680)
               

               
               2-260, gnl|echTel1|scaffold_289928 (50659-50342)
               

               
               2-260, gnl|hg17|chr8 (19841003-19841280)
               

               
               2-260, gnl|Hg17|chr8 (19841057-19841320)
               

               
               2-260, gnl|loxAfr1|scaffold_25358 (13352-13072)
               

               
               2-260, gnl|mm7|chr8 (67335272-67335559)
               

               
               2-260, gnl|Mm7|chr8 (67335328-67335599)
               

               
               2-260, gnl|monDom2|scaffold_1 (76737746-76737522)
               

               
               2-260, gnl|oryCun1|scaffold_214778 (62174-61863)
               

               
               2-260, gnl|rheMac2|chr8 (19837813-19838090)
               

               
               2-260, gnl|rn3|chr16 (22556963-22556668)
               


               
               262-431, gnl|bosTau2|chr8 (35872577-35872746)
               

               
               262-431, gnl|Hg17|chr8 (19849973-19850133)
               

               
               262-431, gnl|Mm7|chr8 (67342196-67342363)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               ldo (0.0970026)

	2-260, gnl\|bosTau2\|chr8 (35866289-35866562)
	2-260, gnl\|canFam2\|chr25 (40095700-40095497)
	2-260, gnl\|dasNov1\|scaffold_15837 (51408-51680)
	2-260, gnl\|echTel1\|scaffold_289928 (50659-50342)
	2-260, gnl\|hg17\|chr8 (19841003-19841280)
	2-260, gnl\|Hg17\|chr8 (19841057-19841320)
	2-260, gnl\|loxAfr1\|scaffold_25358 (13352-13072)
	2-260, gnl\|mm7\|chr8 (67335272-67335559)
	2-260, gnl\|Mm7\|chr8 (67335328-67335599)
	2-260, gnl\|monDom2\|scaffold_1 (76737746-76737522)
	2-260, gnl\|oryCun1\|scaffold_214778 (62174-61863)
	2-260, gnl\|rheMac2\|chr8 (19837813-19838090)
	2-260, gnl\|rn3\|chr16 (22556963-22556668)

	262-431, gnl\|bosTau2\|chr8 (35872577-35872746)
	262-431, gnl\|Hg17\|chr8 (19849973-19850133)
	262-431, gnl\|Mm7\|chr8 (67342196-67342363)