Non-Coding RNA Search

Ss1.1-rpldo0108_g17.5

Sequence:


               
               TGAGCAGTTGTATCCCCTGGTCCTCACCCTGAAGGACTGCATGGGAGAAGTGGTGCATCG
AGCCAAGCAGTCCCTGACGTTCGTGCTCCTTCAGGAACTTGCCTACAGCCTGCCCCAGTG
CTTGATGCTGACGCTGAGAAGAGACGTCGTCTTCAGCCAAGCACTTGCTGGATTGGTTTG
TGGTTTTGTCATCAAATTGCACACAAGTCTGTATGACCCTGGCTTCCTAGAGCAGCTTCA
CACTGTGGGACTGATAGCACAGTATGAAGGTCTGCTAAGTACATACAGTGATGAAATCGG
AATGCTAGAGGACATGGCTGTTGGCATTTCAGATTTGAAGAAAGTCGCCTTTAAAATAAT
TGAAGCCAAATCCAATGATGTCTTGCCAGTTATAACAGGAAGACGTGAACATTATGTGGT
AGAAGTGAAGCTTCCAGCAAGACTGTTTGAGTCACTCCCTCTGCAGATCAAAGAAGGACA
ATTGCTTCGTGTGTATCCAGTACTTTTTAATGTTGGAATCAATGAACAGCAAACTCTTGC
TGAGAGGTTTGGAGATGTCTCTTTGCAAGAAAGTATTAATCAGGAAAATTTTGAACTTCT
GAAAGAATATTACACAGTATTTATGGAAAAGATGCCTCCTGATTACATTTCACATTTCCA
AGAACAAAATGATTTAAAAGGATTACTAGAAAATCTCCATCAAAACATCCAAGCCAAAAA
GAGAAAGAATGTAGAAATCATGTGGCTGGCTGCAACGATTTGTCGCAAACTAAATGGCAT
TCGTTTCACCTGTTGTAAAAGTGCCAAAGACAGGACGTCGATGTCAGTGACACTCGAACA
GTGCTCAATCTTGAGGGATGAGCACCAGTTACACAAGGACTTCTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGCAGTTGTATCCCCTGGTCCTCACCCTGAAGGACTGCATGGGAGAAGTGGTGCATCG
AGCCAAGCAGTCCCTGACGTTCGTGCTCCTTCAGGAACTTGCCTACAGCCTGCCCCAGTG
CTTGATGCTGACGCTGAGAAGAGACGTCGTCTTCAGCCAAGCACTTGCTGGATTGGTTTG
TGGTTTTGTCATCAAATTGCACACAAGTCTGTATGACCCTGGCTTCCTAGAGCAGCTTCA
CACTGTGGGACTGATAGCACAGTATGAAGGTCTGCTAAGTACATACAGTGATGAAATCGG
AATGCTAGAGGACATGGCTGTTGGCATTTCAGATTTGAAGAAAGTCGCCTTTAAAATAAT
TGAAGCCAAATCCAATGATGTCTTGCCAGTTATAACAGGAAGACGTGAACATTATGTGGT
AGAAGTGAAGCTTCCAGCAAGACTGTTTGAGTCACTCCCTCTGCAGATCAAAGAAGGACA
ATTGCTTCGTGTGTATCCAGTACTTTTTAATGTTGGAATCAATGAACAGCAAACTCTTGC
TGAGAGGTTTGGAGATGTCTCTTTGCAAGAAAGTATTAATCAGGAAAATTTTGAACTTCT
GAAAGAATATTACACAGTATTTATGGAAAAGATGCCTCCTGATTACATTTCACATTTCCA
AGAACAAAATGATTTAAAAGGATTACTAGAAAATCTCCATCAAAACATCCAAGCCAAAAA
GAGAAAGAATGTAGAAATCATGTGGCTGGCTGCAACGATTTGTCGCAAACTAAATGGCAT
TCGTTTCACCTGTTGTAAAAGTGCCAAAGACAGGACGTCGATGTCAGTGACACTCGAACA
GTGCTCAATCTTGAGGGATGAGCACCAGTTACACAAGGACTTCTTTAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61867994|ref|XP_612132.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61867994|ref|XP_612132.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               771-888, - strand, RNAz p=0.60782

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               771-888, - strand, RNAz p=0.60782

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               724-888, gnl|bosTau2|chr17 (9260142-9260307)
               

               
               724-888, gnl|Hg17|chr4 (143360981-143360813)
               

               
               724-888, gnl|Mm7|chr8 (80629313-80629449)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               724-888, gnl|bosTau2|chr17 (9260142-9260307)
               

               
               724-888, gnl|Hg17|chr4 (143360981-143360813)
               

               
               724-888, gnl|Mm7|chr8 (80629313-80629449)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nca (0.136874)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

	724-888, gnl\|bosTau2\|chr17 (9260142-9260307)
	724-888, gnl\|Hg17\|chr4 (143360981-143360813)
	724-888, gnl\|Mm7\|chr8 (80629313-80629449)