Non-Coding RNA Search

Ss1.1-rpldo0108_i2.5

Sequence:


               
               CGAGTTTTTTTTTTTTTTTTTTTTTTTTTAAATCATCATAAAAGTTATCTGAGACAAACC
GTCTTTCTCATTATCTACTTTCCCACTTTTTTCCTAGAAATAAAAGGAAAATACTAAAAG
CATTTTGAGTATTTTTACTAGCATAAAATGTTTTATTTTGCTAAAAACTTTTTGAGTATT
TTTACTAGCATAAAATATTTTGCTAAAAACTTTTTGAGTATTTTTGCTAAAAACTTTTTG
AGTATTTTTACTAGCATAAAATTATTTTTATTCACTGAAATTACTTTTGAACTTTCACTT
TATTGTCTCCTCATGAATTTTGTGATGCCTGTTTCTGATGGAGGAAATACCTGACCAAAA
TTGACGATAGGATAGAAACCTTATCCATGTTGCTATGTAGTATGATGAATTACCATCTTT
CTGTTGCTTCAGCCTATTGGTGTAGGTATACCAACAATTAATTTAAGAAAAAGGAGACCC
AATGTTCAGGTAACTGTGAATGAAGTCAGCAGTGCCTTCAAATTTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGTTTTTTTTTTTTTTTTTTTTTTTTTAAATCATCATAAAAGTTATCTGAGACAAACC
GTCTTTCTCATTATCTACTTTCCCACTTTTTTCCTAGAAATAAAAGGAAAATACTAAAAG
CATTTTGAGTATTTTTACTAGCATAAAATGTTTTATTTTGCTAAAAACTTTTTGAGTATT
TTTACTAGCATAAAATATTTTGCTAAAAACTTTTTGAGTATTTTTGCTAAAAACTTTTTG
AGTATTTTTACTAGCATAAAATTATTTTTATTCACTGAAATTACTTTTGAACTTTCACTT
TATTGTCTCCTCATGAATTTTGTGATGCCTGTTTCTGATGGAGGAAATACCTGACCAAAA
TTGACGATAGGATAGAAACCTTATCCATGTTGCTATGTAGTATGATGAATTACCATCTTT
CTGTTGCTTCAGCCTATTGGTGTAGGTATACCAACAATTAATTTAAGAAAAAGGAGACCC
AATGTTCAGGTAACTGTGAATGAAGTCAGCAGTGCCTTCAAATTTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|23304668|emb|CAD28621.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|23304668|emb|CAD28621.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               217-528, gnl|bosTau2|chr4 (17425258-17425557)
               

               
               217-528, gnl|Hg17|chr7 (81275902-81275581)
               

               
               217-528, gnl|Mm7|chr5 (15330225-15330551)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-528, gnl|bosTau2|chr4 (17425258-17425557)
               

               
               217-528, gnl|Hg17|chr7 (81275902-81275581)
               

               
               217-528, gnl|Mm7|chr5 (15330225-15330551)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               amn (0.417711)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ldo (0.0970026)

	217-528, gnl\|bosTau2\|chr4 (17425258-17425557)
	217-528, gnl\|Hg17\|chr7 (81275902-81275581)
	217-528, gnl\|Mm7\|chr5 (15330225-15330551)