Non-Coding RNA Search

Ss1.1-rpldo0108_j18.5

Sequence:


               
               AGAACGCGCCTGCGAGGTCCTGTGTTCGTCGCCGTCTCCGTCTCGTCCGATGCACCGACA
GAATTTTCGACCCCCGACTCCTCCTTACCCCGGCCCGGGTGTAGGAGGTTGGGGGAGCGG
GAGCGGCCTGCGGGGTGCCCCGGGCGGAGGCGGACCGCGGCCGCCGTCCCCGCGGGACGG
GTACGGGAGTCCCCACCACACGTCGCCGTACGGGCCCCGGTCTAGGCCCTACGGGAGCGG
CCACTCTCCGCGACACGGCGGCAGCTTCCCTGGGGGCCGGTTCGGGTCGCCGTCCCCTGG
CGGCCACCCCGGCACCTACGCCAGGTCCCCCGCGGGGTCCCAGCAGCAATTCGGCTACTC
CCCGGGGCCGCAGCAGACGCACCCCCAGGGTTCTCCAAGGACATCTACGCCATTTGGATC
AGGGCGTGGTAGAGAAAAGAGAATGTCTAATGAGTTGGAAAGTTATTTCAAGCCTTCAAT
GCTTGAAGACCCTTGGGCTGGCCTAGAACCAGTGTCTGTAGTGGATATAAGCCAACAATA
CAGCAGTACTCAAACATTCACAGGCAAAAAAGGAAGATACTTTTGTTAACATTTCTGAAA
TTCAGCTGGAAGCTTCATGTGTCAGGAACATCTTGGACAAAACTTTTGCTTGTAATTAAG
TTGAACCCTAACTTGGTGACTTTGAGTAATTAGTTGTGTCTTCTTTCATCATATCAAGTA
TTTTTGGTATTAAAGAAGACATGGTAGGATAATTTGCAATATTTAGCCCTCTGGAAGTGC
CTACCACATTTTAGAAGATTGACAGTTTCCAAATACTTAACATTCTTGGTTATATAATGG
ACATTTGTCTTTTAATGTTTTTCCAATGTTTTAAAATAAAACATTTTGTCTTTTTAGCTA
ATTGTGCTTTTGTCATATGCTAAAGAAGGATTATTAAAGTAATGCTTTGTAATCATGTGG
TTAGAATTTGTAAGTATATATTTTGCATACTACTTTTGAAAATAAAATAGACCATCCTTT
GTGCTGTAGACAGTTCTATATTTGTTCATAAGGAAAGGGGGTAAAGAAAGAATAAAGGAA
ATTTCTATTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACGCGCCTGCGAGGTCCTGTGTTCGTCGCCGTCTCCGTCTCGTCCGATGCACCGACA
GAATTTTCGACCCCCGACTCCTCCTTACCCCGGCCCGGGTGTAGGAGGTTGGGGGAGCGG
GAGCGGCCTGCGGGGTGCCCCGGGCGGAGGCGGACCGCGGCCGCCGTCCCCGCGGGACGG
GTACGGGAGTCCCCACCACACGTCGCCGTACGGGCCCCGGTCTAGGCCCTACGGGAGCGG
CCACTCTCCGCGACACGGCGGCAGCTTCCCTGGGGGCCGGTTCGGGTCGCCGTCCCCTGG
CGGCCACCCCGGCACCTACGCCAGGTCCCCCGCGGGGTCCCAGCAGCAATTCGGCTACTC
CCCGGGGCCGCAGCAGACGCACCCCCAGGGTTCTCCAAGGACATCTACGCCATTTGGATC
AGGGCGTGGTAGAGAAAAGAGAATGTCTAATGAGTTGGAAAGTTATTTCAAGCCTTCAAT
GCTTGAAGACCCTTGGGCTGGCCTAGAACCAGTGTCTGTAGTGGATATAAGCCAACAATA
CAGCAGTACTCAAACATTCACAGGCAAAAAAGGAAGATACTTTTGTTAACATTTCTGAAA
TTCAGCTGGAAGCTTCATGTGTCAGGAACATCTTGGACAAAACTTTTGCTTGTAATTAAG
TTGAACCCTAACTTGGTGACTTTGAGTAATTAGTTGTGTCTTCTTTCATCATATCAAGTA
TTTTTGGTATTAAAGAAGACATGGTAGGATAATTTGCAATATTTAGCCCTCTGGAAGTGC
CTACCACATTTTAGAAGATTGACAGTTTCCAAATACTTAACATTCTTGGTTATATAATGG
ACATTTGTCTTTTAATGTTTTTCCAATGTTTTAAAATAAAACATTTTGTCTTTTTAGCTA
ATTGTGCTTTTGTCATATGCTAAAGAAGGATTATTAAAGTAATGCTTTGTAATCATGTGG
TTAGAATTTGTAAGTATATATTTTGCATACTACTTTTGAAAATAAAATAGACCATCCTTT
GTGCTGTAGACAGTTCTATATTTGTTCATAAGGAAAGGGGGTAAAGAAAGAATAAAGGAA
ATTTCTATTCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8TAP9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8TAP9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               466-585, - strand, RNAz p=0.678873

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               466-585, - strand, RNAz p=0.678873

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               387-1090, gnl|bosTau2|chr4 (47629800-47630504)
               

               
               387-1090, gnl|Hg17|chr7 (39946100-39945393)
               

               
               387-1090, gnl|Mm7|chr13 (17058612-17059257)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               387-1090, gnl|bosTau2|chr4 (47629800-47630504)
               

               
               387-1090, gnl|Hg17|chr7 (39946100-39945393)
               

               
               387-1090, gnl|Mm7|chr13 (17058612-17059257)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               thg (0.380373)
               

               
               sag (0.36543)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	387-1090, gnl\|bosTau2\|chr4 (47629800-47630504)
	387-1090, gnl\|Hg17\|chr7 (39946100-39945393)
	387-1090, gnl\|Mm7\|chr13 (17058612-17059257)

	thg (0.380373)
	sag (0.36543)
	sin (0.349895)
	vin (0.332557)
	cki (0.330469)
	ova (0.258264)
	tra (0.246184)
	cbe (0.239234)
	mgp (0.230681)
	spc (0.226732)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	mga (0.160205)
	bfe (0.149858)
	ski (0.146735)
	pty (0.142714)
	che (0.136314)
	pla (0.133672)
	ret (0.128733)
	eep (0.122564)
	pgl (0.118483)
	cbl (0.114797)
	ldo (0.0970026)