Non-Coding RNA Search

Ss1.1-rpldo0109_a6.5.5

Sequence:


               
               TGGTGTTATCTGCATTGTTTTTGTTTGTGGTTGTTCTGATGTGTGAAATCTAAGGAAAGA
GCCATTAAAAAATGCCAAGCAGGGCAATGCAAGTACAGCCAAATATTAGAGTTGATGTGC
AATCTTAGGTCCTTTTAAATCTGGGGTGATATAGGCAGTACTTTAAAAAGTCTTCCTGGC
CTATTTTCCTCCACATATTTGTAATTACTTTGGGGGCTTACTGGTTGTGGCAGTACTAAA
ATCAAAGGAGCTGGTTCTTCTTTTCTCCCAATTCTTTTCATATTTAAGAAGGCACCTACA
AATTAGCTTGTTAGTTCTATTCATATGCATCAAGAATCAGTGAATGCTTTTCTGTTAGCA
CATTTAAGTATCTTTGTTTTTATATAAAAATCAGATGAATATGAAAACCAATGACCTTCC
ATTCTGTATCTTGCCTTGTAAAAATGCCAGTAATTTAGAGCTAGGACCTTTCCTCAAATC
CAGGAGGCCAACTATGTTAAAGGAAGGGGGTCCCTTTTAAAGAAGGCAGATTTTTTTTCA
ATATTTGGGTTCTATTAGAGAGAGTCCTCCTGTGGGAAAACCTAGCTAGCATTACAAATT
TTCCATACACTGGGGAAGGAAATTCACTGTTCTAAACCCAGAAGGGTTTGTTGCACTTTT
CCTGCTTTTTTAGGCCTGGGTAACAATATCACCATTCTTTACATAAGGGCAAATGGACTT
CAATTGAGAGAAGCTTTATAGGTTCAAGGGTTAGTTGTACAACATGAACCATGTAGTCTC
TTTCTTTCCAAGGGAATTTGACTGGGCTTACTAAGGAAAAGCTGTTTGTTGTGCTAATGC
AAAAGTGCCATACAATTAGAATTAGCTCAGCTTTTGAAGATGGTAAACTTAAGGAACTGA
ATGTTGTTCTGAAATGCAGAAACTTGCAGAATGTTTTTCTTTCAAAACAGGCTGATTTTT
TTTTTCTTTTCCTGACAGTACAAGTTTCAACTCCTGTTTAAAGTTCTTGTGTCAGTTATT
TTCTTGTTTAAATTTTCCTTATATTTCCACCTGTAATGTCAGTGGCAACATCATTCACTT
GTTTATTTACCCTTTATTCTAAGAGCAAATTGAGTTGAACTGAATCTTCCTTGTTCTAGT
AACATTGTATAAATAAAATGGCTTCTCTGTACAAATGGTTTGTAAGGCCTCCTGATGGAT
ATAATTTTGTGATTGTATTTAAGATTAAAAGTTGAATAAAACACACCAGCTTCCTGAAAA
TATTCATAATGCATTTTTTGGAAAACAAAATACATGCCTACTTTGTGCATATTTGCATTA
ACATGGCAAAGATTGTATGAAATACCTGTTTTTCAAAAAATAAAGTTTTAAAAGATTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGTTATCTGCATTGTTTTTGTTTGTGGTTGTTCTGATGTGTGAAATCTAAGGAAAGA
GCCATTAAAAAATGCCAAGCAGGGCAATGCAAGTACAGCCAAATATTAGAGTTGATGTGC
AATCTTAGGTCCTTTTAAATCTGGGGTGATATAGGCAGTACTTTAAAAAGTCTTCCTGGC
CTATTTTCCTCCACATATTTGTAATTACTTTGGGGGCTTACTGGTTGTGGCAGTACTAAA
ATCAAAGGAGCTGGTTCTTCTTTTCTCCCAATTCTTTTCATATTTAAGAAGGCACCTACA
AATTAGCTTGTTAGTTCTATTCATATGCATCAAGAATCAGTGAATGCTTTTCTGTTAGCA
CATTTAAGTATCTTTGTTTTTATATAAAAATCAGATGAATATGAAAACCAATGACCTTCC
ATTCTGTATCTTGCCTTGTAAAAATGCCAGTAATTTAGAGCTAGGACCTTTCCTCAAATC
CAGGAGGCCAACTATGTTAAAGGAAGGGGGTCCCTTTTAAAGAAGGCAGATTTTTTTTCA
ATATTTGGGTTCTATTAGAGAGAGTCCTCCTGTGGGAAAACCTAGCTAGCATTACAAATT
TTCCATACACTGGGGAAGGAAATTCACTGTTCTAAACCCAGAAGGGTTTGTTGCACTTTT
CCTGCTTTTTTAGGCCTGGGTAACAATATCACCATTCTTTACATAAGGGCAAATGGACTT
CAATTGAGAGAAGCTTTATAGGTTCAAGGGTTAGTTGTACAACATGAACCATGTAGTCTC
TTTCTTTCCAAGGGAATTTGACTGGGCTTACTAAGGAAAAGCTGTTTGTTGTGCTAATGC
AAAAGTGCCATACAATTAGAATTAGCTCAGCTTTTGAAGATGGTAAACTTAAGGAACTGA
ATGTTGTTCTGAAATGCAGAAACTTGCAGAATGTTTTTCTTTCAAAACAGGCTGATTTTT
TTTTTCTTTTCCTGACAGTACAAGTTTCAACTCCTGTTTAAAGTTCTTGTGTCAGTTATT
TTCTTGTTTAAATTTTCCTTATATTTCCACCTGTAATGTCAGTGGCAACATCATTCACTT
GTTTATTTACCCTTTATTCTAAGAGCAAATTGAGTTGAACTGAATCTTCCTTGTTCTAGT
AACATTGTATAAATAAAATGGCTTCTCTGTACAAATGGTTTGTAAGGCCTCCTGATGGAT
ATAATTTTGTGATTGTATTTAAGATTAAAAGTTGAATAAAACACACCAGCTTCCTGAAAA
TATTCATAATGCATTTTTTGGAAAACAAAATACATGCCTACTTTGTGCATATTTGCATTA
ACATGGCAAAGATTGTATGAAATACCTGTTTTTCAAAAAATAAAGTTTTAAAAGATTTAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-107, - strand, RNAz p=0.809526
               

               
               1250-1367, - strand, RNAz p=0.798351

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-107, - strand, RNAz p=0.809526
               

               
               1250-1367, - strand, RNAz p=0.798351

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-1375, gnl|bosTau2|chr25 (11786842-11788211)
               

               
               1-1375, gnl|Hg17|chr16 (18725056-18723683)
               

               
               1-1375, gnl|Mm7|chr7 (114055203-114053885)
               


               
               1009-1347, gnl|bosTau2|chr23 (26181374-26181725)
               

               
               1009-1347, gnl|Hg17|chr16 (18724056-18723713)
               

               
               1009-1347, gnl|Mm7|chr7 (114054231-114053923)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1375, gnl|bosTau2|chr25 (11786842-11788211)
               

               
               1-1375, gnl|Hg17|chr16 (18725056-18723683)
               

               
               1-1375, gnl|Mm7|chr7 (114055203-114053885)
               


               
               1009-1347, gnl|bosTau2|chr23 (26181374-26181725)
               

               
               1009-1347, gnl|Hg17|chr16 (18724056-18723713)
               

               
               1009-1347, gnl|Mm7|chr7 (114054231-114053923)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               fty (0.527519)
               

               
               liv (0.438853)
               

               
               pty (0.428143)
               

               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               isp (0.300752)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.527519)
               

               
               liv (0.438853)
               

               
               pty (0.428143)
               

               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               isp (0.300752)
               

               
               lin (0.291206)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-107, - strand, RNAz p=0.809526
	1250-1367, - strand, RNAz p=0.798351

	1-1375, gnl\|bosTau2\|chr25 (11786842-11788211)
	1-1375, gnl\|Hg17\|chr16 (18725056-18723683)
	1-1375, gnl\|Mm7\|chr7 (114055203-114053885)

	1009-1347, gnl\|bosTau2\|chr23 (26181374-26181725)
	1009-1347, gnl\|Hg17\|chr16 (18724056-18723713)
	1009-1347, gnl\|Mm7\|chr7 (114054231-114053923)

	fty (0.527519)
	liv (0.438853)
	pty (0.428143)
	tra (0.369276)
	sin (0.349895)
	rec (0.346141)
	isp (0.300752)
	lin (0.291206)
	kid (0.259471)
	thg (0.253582)
	mgm (0.180343)
	ill (0.175593)
	fco (0.157208)
	cag (0.151194)
	lun (0.150489)
	fat (0.147427)
	spl (0.143184)
	ute (0.132784)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	ecc (0.115035)
	jca (0.11396)
	ldo (0.0970026)