Ss1.1-rpldo0110_o20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCGAGCACTTGAGCTATTTCAGCCACATGAAAAGCATCGGAACTGAGATCGCAGCTCA GAGGACACCGGGCGTCCCTTGCACTCACTGAGAAGCCTTGTATTCTTGCACCTGACTGCC TGGGACCTTCCTCAGGCAGGAAACAAATACATAAAGCAGGGCTAAGACCACATCAGTATG TCGAAGCAGCCAGTTTCCAATGTCAGAGCCATCCAGGCAAATATCAATATTCCGATGGGA GCCTTTCGGCCAGGAGCTGGGCAACCCCCCAGAAAAAAAGAATGTACCCCAGAAACAGAG GAGGCTGTTCTTCCTACTTCAGATGAGGAGAAGAAGCCAATTCCAGGAGCAAAGAAACTC CCAGGACCTGCGGTCAACCTATCGGAGATCCAGAACATTAAAAGTGAACTGAAGTACGTC CCCAGAGCTGAACAGTAGTTGGAAGAAAAAAAGGCTTGATGTGAAGAATTGAAGAGTAAG AGAATGGATTCAAATTAAAGTAGCTCACTAAAAATTTTATATATTTGTATGAAGATTATG TACCTCCGGAATGCCTGAGACTCTAGCAGAAATGTCCCATTTGTACATTTATATCTCTTC CTTCTAGTTGGCTGCACTACTTGTTTTATCTTCATGTTTGGCAGCTTGCAGAGCCAGTCA GCTCAAGAACTCACTGCCTGGAGGGTGTGGTTTTTGAGGAGGGATATGATTTTCTGGAGA AGGATATGGCAATAGGCATATGGCAATAACAGTGATTTTGATAGAGAGTTCTCTAAGCTA CTTCGCACACTATTTTGGTCAATATTTGGAATTGTATTTTAGTTCTTCACCTTCTGAATT ATGTCAATAAACTTTTTATGAGTTCAAATAAATATGTGAGTAAACGTAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCGAGCACTTGAGCTATTTCAGCCACATGAAAAGCATCGGAACTGAGATCGCAGCTCA GAGGACACCGGGCGTCCCTTGCACTCACTGAGAAGCCTTGTATTCTTGCACCTGACTGCC TGGGACCTTCCTCAGGCAGGAAACAAATACATAAAGCAGGGCTAAGACCACATCAGTATG TCGAAGCAGCCAGTTTCCAATGTCAGAGCCATCCAGGCAAATATCAATATTCCGATGGGA GCCTTTCGGCCAGGAGCTGGGCAACCCCCCAGAAAAAAAGAATGTACCCCAGAAACAGAG GAGGCTGTTCTTCCTACTTCAGATGAGGAGAAGAAGCCAATTCCAGGAGCAAAGAAACTC CCAGGACCTGCGGTCAACCTATCGGAGATCCAGAACATTAAAAGTGAACTGAAGTACGTC CCCAGAGCTGAACAGTAGTTGGAAGAAAAAAAGGCTTGATGTGAAGAATTGAAGAGTAAG AGAATGGATTCAAATTAAAGTAGCTCACTAAAAATTTTATATATTTGTATGAAGATTATG TACCTCCGGAATGCCTGAGACTCTAGCAGAAATGTCCCATTTGTACATTTATATCTCTTC CTTCTAGTTGGCTGCACTACTTGTTTTATCTTCATGTTTGGCAGCTTGCAGAGCCAGTCA GCTCAAGAACTCACTGCCTGGAGGGTGTGGTTTTTGAGGAGGGATATGATTTTCTGGAGA AGGATATGGCAATAGGCATATGGCAATAACAGTGATTTTGATAGAGAGTTCTCTAAGCTA CTTCGCACACTATTTTGGTCAATATTTGGAATTGTATTTTAGTTCTTCACCTTCTGAATT ATGTCAATAAACTTTTTATGAGTTCAAATAAATATGTGAGTAAACGTAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-160, gnl|bosTau2|chrX (38862076-38862233) | |
| 1-160, gnl|canFam2|chrX (17524645-17525068) | |
| 1-160, gnl|dasNov1|scaffold_80369 (4082-4504) | |
| 1-160, gnl|galGal2|chr1 (112463771-112463356) | |
| 1-160, gnl|hg17|chrX (21535685-21536104) | |
| 1-160, gnl|Hg17|chrX (21535867-21535716) | |
| 1-160, gnl|mm7|chrX (152473708-152473284) | |
| 1-160, gnl|Mm7|chrX (152473516-152473676) | |
| 1-160, gnl|monDom2|scaffold_48 (11223456-11223013) | |
| 1-160, gnl|oryCun1|scaffold_199232 (78231-78655) | |
| 1-160, gnl|panTro1|chrX_random (34737672-34738091) | |
| 1-160, gnl|rheMac2|chrX (19510400-19510829) | |
| 1-160, gnl|rn3|chrX (58634338-58634757) | |
| 302-451, gnl|bosTau2|chrX (38883853-38884002) | |
| 302-451, gnl|Hg17|chrX (21515474-21515325) | |
| 302-451, gnl|Mm7|chrX (152495291-152495440) | |
| 452-891, gnl|bosTau2|chrX (38916448-38916878) | |
| 452-891, gnl|canFam2|chrX (17471713-17472229) | |
| 452-891, gnl|echTel1|scaffold_325173 (67821-67351) | |
| 452-891, gnl|hg17|chrX (21483680-21484204) | |
| 452-891, gnl|Hg17|chrX (21484171-21483753) | |
| 452-891, gnl|loxAfr1|scaffold_9293 (47204-46656) | |
| 452-891, gnl|mm7|chrX (152527030-152526497) | |
| 452-891, gnl|Mm7|chrX (152526532-152526955) | |
| 452-891, gnl|monDom2|scaffold_48 (11314158-11313618) | |
| 452-891, gnl|oryCun1|scaffold_212225 (72662-72138) | |
| 452-891, gnl|panTro1|chrX_random (34679640-34680164) | |
| 452-891, gnl|rheMac2|chrX (19458084-19458608) | |
| 452-891, gnl|rn3|chrX (58574450-58574984) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-160, gnl|bosTau2|chrX (38862076-38862233) | |
| 1-160, gnl|canFam2|chrX (17524645-17525068) | |
| 1-160, gnl|dasNov1|scaffold_80369 (4082-4504) | |
| 1-160, gnl|galGal2|chr1 (112463771-112463356) | |
| 1-160, gnl|hg17|chrX (21535685-21536104) | |
| 1-160, gnl|Hg17|chrX (21535867-21535716) | |
| 1-160, gnl|mm7|chrX (152473708-152473284) | |
| 1-160, gnl|Mm7|chrX (152473516-152473676) | |
| 1-160, gnl|monDom2|scaffold_48 (11223456-11223013) | |
| 1-160, gnl|oryCun1|scaffold_199232 (78231-78655) | |
| 1-160, gnl|panTro1|chrX_random (34737672-34738091) | |
| 1-160, gnl|rheMac2|chrX (19510400-19510829) | |
| 1-160, gnl|rn3|chrX (58634338-58634757) | |
| 302-451, gnl|bosTau2|chrX (38883853-38884002) | |
| 302-451, gnl|Hg17|chrX (21515474-21515325) | |
| 302-451, gnl|Mm7|chrX (152495291-152495440) | |
| 452-891, gnl|bosTau2|chrX (38916448-38916878) | |
| 452-891, gnl|canFam2|chrX (17471713-17472229) | |
| 452-891, gnl|echTel1|scaffold_325173 (67821-67351) | |
| 452-891, gnl|hg17|chrX (21483680-21484204) | |
| 452-891, gnl|Hg17|chrX (21484171-21483753) | |
| 452-891, gnl|loxAfr1|scaffold_9293 (47204-46656) | |
| 452-891, gnl|mm7|chrX (152527030-152526497) | |
| 452-891, gnl|Mm7|chrX (152526532-152526955) | |
| 452-891, gnl|monDom2|scaffold_48 (11314158-11313618) | |
| 452-891, gnl|oryCun1|scaffold_212225 (72662-72138) | |
| 452-891, gnl|panTro1|chrX_random (34679640-34680164) | |
| 452-891, gnl|rheMac2|chrX (19458084-19458608) | |
| 452-891, gnl|rn3|chrX (58574450-58574984) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| vin (10.3093) | |
| isp (8.87218) | |
| tbr (8.63398) | |
| ssp (7.04703) | |
| ste (4.8675) | |
| bfe (4.34587) | |
| ldo (3.7831) | |
| hea (3.06748) | |
| nms (2.99401) | |
| che (2.18103) | |
| sme (1.52718) | |
| mas (1.26183) | |
| ton (1.053) | |
| ese (0.506009) | |
| eru (0.360144) | |
| sto (0.359648) | |
| cbe (0.239234) | |
| nep (0.183925) | |
| pty (0.142714) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| jca (0.11396) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (10.3093) | |
| isp (8.87218) | |
| tbr (8.63398) | |
| ssp (7.04703) | |
| ste (4.8675) | |
| bfe (4.34587) | |
| ldo (3.7831) | |
| hea (3.06748) | |
| nms (2.99401) | |
| che (2.18103) | |
| sme (1.52718) | |
| mas (1.26183) | |
| ton (1.053) | |
| ese (0.506009) | |
| eru (0.360144) | |
| sto (0.359648) | |
| cbe (0.239234) | |
| nep (0.183925) | |
| pty (0.142714) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| jca (0.11396) |