Non-Coding RNA Search

Ss1.1-rpldo0111_g3.5

Sequence:


               
               GTATCTTTCACCCACAGAAAAATCACACAGGAGAGAAGCCTTGAGTGTAATAGATTTGTG
GAAAACTGCAATCTGAACTCAAACCTTATTATGCATCAGAGAATTCCTTCAATTAAAATA
CCCCTTGACTCAGACACACAAGGAAATAGCATCAAACATAATTCAGACCTGATTTACTAT
CAGGGAAACTATGTAAGAGAGAATCCTTATGAATTTAATGAGTGTGGAAAAATCTTCAAT
CAACATATTCTTCTTACTAATCACATTCGTACTGAAGGGAAACCCAGTGAATGTGGGAAG
CCCTTCAGCCAAAACTCATCTCTTACTCAACCTCAGATAGTCCTTACAGGAGAGAAGCCC
TATAAGTGTGATGAATGTGGGAAAAGATTCAGCCAGAGGATACATCTTATTCAACATCAG
AGAATTCACACAGGAGAAAAACCTTTTATTTGCAATGAATGTGGGAAAGCCTTTCGTCAG
CACTCATCTTTTACTCAACATCTGAGAATTCATACTGGAGAGAAGCCCTATAAATGCAGT
CAATGTGGTAAAGCCTTTAGCCGTATCACATCCCTCACTGAACATCATAGACTTCATACT
GGAGAGAAACCTTACGAATGTAGTTTTTGTGGGAAAGCCTTCAGCCAGAGGACACATCTT
AATCAGCATGAGAGAACTCATACAGGAGAGAAACCCTATAAATGTAATGAATGTGAAAAA
GCCTTTAGCCAGAGTGCACACCTTAATCAACATAGGAAAATCCATACTCGGGAGAAATTA
TGTGAATATAATAAATGTGAGAAAACCTTAAGCCACAGTCCTTCACTTACTCAACAGCAC
ATAACTCAGAATTTTTAGCCTTGTTCTCAGGGAGGTGGGGGTGGAGGGAGGAGAATCATA
TGAATATATAAAAGTAAGACATTTAAAAAAAGCTTTTTTGGTTAGACCTTTTCATCCCAT
TCAATATCAAATTATTCATAGTGAAGAGAAGGCTTATAAATAAACTCCTAATGCATAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATCTTTCACCCACAGAAAAATCACACAGGAGAGAAGCCTTGAGTGTAATAGATTTGTG
GAAAACTGCAATCTGAACTCAAACCTTATTATGCATCAGAGAATTCCTTCAATTAAAATA
CCCCTTGACTCAGACACACAAGGAAATAGCATCAAACATAATTCAGACCTGATTTACTAT
CAGGGAAACTATGTAAGAGAGAATCCTTATGAATTTAATGAGTGTGGAAAAATCTTCAAT
CAACATATTCTTCTTACTAATCACATTCGTACTGAAGGGAAACCCAGTGAATGTGGGAAG
CCCTTCAGCCAAAACTCATCTCTTACTCAACCTCAGATAGTCCTTACAGGAGAGAAGCCC
TATAAGTGTGATGAATGTGGGAAAAGATTCAGCCAGAGGATACATCTTATTCAACATCAG
AGAATTCACACAGGAGAAAAACCTTTTATTTGCAATGAATGTGGGAAAGCCTTTCGTCAG
CACTCATCTTTTACTCAACATCTGAGAATTCATACTGGAGAGAAGCCCTATAAATGCAGT
CAATGTGGTAAAGCCTTTAGCCGTATCACATCCCTCACTGAACATCATAGACTTCATACT
GGAGAGAAACCTTACGAATGTAGTTTTTGTGGGAAAGCCTTCAGCCAGAGGACACATCTT
AATCAGCATGAGAGAACTCATACAGGAGAGAAACCCTATAAATGTAATGAATGTGAAAAA
GCCTTTAGCCAGAGTGCACACCTTAATCAACATAGGAAAATCCATACTCGGGAGAAATTA
TGTGAATATAATAAATGTGAGAAAACCTTAAGCCACAGTCCTTCACTTACTCAACAGCAC
ATAACTCAGAATTTTTAGCCTTGTTCTCAGGGAGGTGGGGGTGGAGGGAGGAGAATCATA
TGAATATATAAAAGTAAGACATTTAAAAAAAGCTTTTTTGGTTAGACCTTTTCATCCCAT
TCAATATCAAATTATTCATAGTGAAGAGAAGGCTTATAAATAAACTCCTAATGCATAGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57087503|ref|XP_546900.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57087503|ref|XP_546900.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-1019, gnl|bosTau2|chr25 (23420032-23421036)
               

               
               1-1019, gnl|Hg17|chr7 (55781075-55782345)
               


               
               7-848, gnl|bosTau2|chr18 (41949287-41948429)
               


               
               8-812, gnl|bosTau2|chr11 (74555046-74554225)
               

               
               8-812, gnl|Hg17|chr9 (127286160-127286981)
               

               
               8-812, gnl|Mm7|chr11 (62796248-62795427)
               


               
               15-789, gnl|bosTau2|chr10 (8996780-8995989)
               

               
               15-789, gnl|Hg17|chr19 (42818585-42817755)
               

               
               15-789, gnl|Mm7|chr2 (127310211-127309504)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1019, gnl|bosTau2|chr25 (23420032-23421036)
               

               
               1-1019, gnl|Hg17|chr7 (55781075-55782345)
               


               
               7-848, gnl|bosTau2|chr18 (41949287-41948429)
               


               
               8-812, gnl|bosTau2|chr11 (74555046-74554225)
               

               
               8-812, gnl|Hg17|chr9 (127286160-127286981)
               

               
               8-812, gnl|Mm7|chr11 (62796248-62795427)
               


               
               15-789, gnl|bosTau2|chr10 (8996780-8995989)
               

               
               15-789, gnl|Hg17|chr19 (42818585-42817755)
               

               
               15-789, gnl|Mm7|chr2 (127310211-127309504)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ldo (0.0970026)

	1-1019, gnl\|bosTau2\|chr25 (23420032-23421036)
	1-1019, gnl\|Hg17\|chr7 (55781075-55782345)

	7-848, gnl\|bosTau2\|chr18 (41949287-41948429)

	8-812, gnl\|bosTau2\|chr11 (74555046-74554225)
	8-812, gnl\|Hg17\|chr9 (127286160-127286981)
	8-812, gnl\|Mm7\|chr11 (62796248-62795427)

	15-789, gnl\|bosTau2\|chr10 (8996780-8995989)
	15-789, gnl\|Hg17\|chr19 (42818585-42817755)
	15-789, gnl\|Mm7\|chr2 (127310211-127309504)