Non-Coding RNA Search

Ss1.1-rpldo0111_n22.5

Sequence:


               
               CAATTCTTGAACTGATGTCAGCACCCGAGTGGCTCTGAATTTTAAGTCTGGGACAGCATC
TTTTATTTTTACATGAATCTCTAAACAATTCTGTGGGCAAAGTTTGTAGCTACTGGATTA
TTGTCTGTCTTTAGAGCAAGTTCCAGTAAACCGCAAGTATGACAAAGGATATCCAGTTTA
TGCTTGGAGCATTCGGTACCTATCAGTTTCTGATGTTTCAGGCTAGGAGTGGGGTAAATA
AGTGTGACCACTTAAAGCTGCTGTTAGCATGGAAGACTTCTCCATTCTATCTTAGTAAAA
ACAGACAAAAAATGCACTTGACATAATAGCAAACTGGTTCTGAATTAAGAGACTGTTTGC
TATTTATTTAGTAAACTAGCAAATGATGCACATATTTTGCTTTTCATGTACTGGGCAATA
TAAATAAAATTAAATCTGTCCCTTTTTTCCCCCTTGAATGAGGTCTTCCATGTTTGAGGA
AAAGTCTTGCACTATTGCATATATTTTGGGGACACAGATTTCTCAGTTTCCATTTTGGGG
GGGGGGGTTAAGCATATTTTTTTTCCTGTTTGAATACTTTTACACTTTCTGATGTATAGT
ACTTGAAGTTCTTACCAGAAAATTACTTTTGAATTTTGAAGCCTTTATTCAAACTGCTTT
TAAATAAGTGGTTTATTGTCAGTGTTTCGTTTTGTTTTTTTATAGCATATTCTTCCTCTT
CTCTTTCATTTTTTTCTCCTTCCCGTTTATATATGTCTGTGTGTATATGTGTGTGTGTAT
ACACAAACACACAAATTATATATTATATATATATATATATATAATTTCCAATCCAAGATA
TTGCCCTGCCACCCATGAAAACTGTTCTGGCACCAAAAGTAATGATCAATGTTAAGTGTA
ATAGGTAAATTAAAGCAAAGAGCCATTCAGCTTCAGTCTTTACGTACCATGAATAAAACA
TAAGAACATCACATGGAGAAGTTTACATGGTGATTGTTCACCTGCAGTACTGTGGACTTT
TTAACATTTTGTCCCTTTTCAGTGAACCAGAGTAAAAATATTCATCTACCATTACTGTTA
TTTGCTGTTTTCCTTTTTTCTTTCCTTTTTTTTTTTTTTTTTTTTCTGGATGGTAATATT
CTATTCTATCCTTATGACACTATTGCAACCAAATTGGCTTTACCATCTTGGCTTTAGTAG
GTATAGAAGACAATGGATTACCATCTTTATTGCTGTAATGTGTTAAGCATTATATGCTAG
TAGTATCTAGTTTAATTGTTTCAGGTGGAAAGTATTCTTTGAGTTTCCATTTTGAATGTG
TTGGGACTAAACAAACAATAAACTACTGATGTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATTCTTGAACTGATGTCAGCACCCGAGTGGCTCTGAATTTTAAGTCTGGGACAGCATC
TTTTATTTTTACATGAATCTCTAAACAATTCTGTGGGCAAAGTTTGTAGCTACTGGATTA
TTGTCTGTCTTTAGAGCAAGTTCCAGTAAACCGCAAGTATGACAAAGGATATCCAGTTTA
TGCTTGGAGCATTCGGTACCTATCAGTTTCTGATGTTTCAGGCTAGGAGTGGGGTAAATA
AGTGTGACCACTTAAAGCTGCTGTTAGCATGGAAGACTTCTCCATTCTATCTTAGTAAAA
ACAGACAAAAAATGCACTTGACATAATAGCAAACTGGTTCTGAATTAAGAGACTGTTTGC
TATTTATTTAGTAAACTAGCAAATGATGCACATATTTTGCTTTTCATGTACTGGGCAATA
TAAATAAAATTAAATCTGTCCCTTTTTTCCCCCTTGAATGAGGTCTTCCATGTTTGAGGA
AAAGTCTTGCACTATTGCATATATTTTGGGGACACAGATTTCTCAGTTTCCATTTTGGGG
GGGGGGGTTAAGCATATTTTTTTTCCTGTTTGAATACTTTTACACTTTCTGATGTATAGT
ACTTGAAGTTCTTACCAGAAAATTACTTTTGAATTTTGAAGCCTTTATTCAAACTGCTTT
TAAATAAGTGGTTTATTGTCAGTGTTTCGTTTTGTTTTTTTATAGCATATTCTTCCTCTT
CTCTTTCATTTTTTTCTCCTTCCCGTTTATATATGTCTGTGTGTATATGTGTGTGTGTAT
ACACAAACACACAAATTATATATTATATATATATATATATATAATTTCCAATCCAAGATA
TTGCCCTGCCACCCATGAAAACTGTTCTGGCACCAAAAGTAATGATCAATGTTAAGTGTA
ATAGGTAAATTAAAGCAAAGAGCCATTCAGCTTCAGTCTTTACGTACCATGAATAAAACA
TAAGAACATCACATGGAGAAGTTTACATGGTGATTGTTCACCTGCAGTACTGTGGACTTT
TTAACATTTTGTCCCTTTTCAGTGAACCAGAGTAAAAATATTCATCTACCATTACTGTTA
TTTGCTGTTTTCCTTTTTTCTTTCCTTTTTTTTTTTTTTTTTTTTCTGGATGGTAATATT
CTATTCTATCCTTATGACACTATTGCAACCAAATTGGCTTTACCATCTTGGCTTTAGTAG
GTATAGAAGACAATGGATTACCATCTTTATTGCTGTAATGTGTTAAGCATTATATGCTAG
TAGTATCTAGTTTAATTGTTTCAGGTGGAAAGTATTCTTTGAGTTTCCATTTTGAATGTG
TTGGGACTAAACAAACAATAAACTACTGATGTCTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1110-1252, + strand, RNAz p=0.996669

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1110-1252, + strand, RNAz p=0.996669

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1128-1224, + strand, RNAmicro p=0.954253

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1128-1224, + strand, RNAmicro p=0.954253

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1127-1252, AM018700 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007411m10 
(emb|AM018700.1|), blast E-value=0, identity=100% 
               

               
               1127-1252, AM026126 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0007391p16 
(emb|AM026126.1|), blast E-value=0, identity=100% 
               

               
               1127-1252, AM026780 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0007391p16 
(emb|AM026780.1|), blast E-value=0, identity=100% 
               

               
               1127-1252, CR938831 Normalized and Subtracted bovine embryonic and 
(emb|CR938831.1|), blast E-value=0, identity=100% 
               

               
               1127-1252, UMC-bof_0B02-022-e06 Ovarian follicle recruited bof Bos taurus cDNA 
(gb|DN823793.1|), blast E-value=0, identity=100% 
               

               
               1127-1252, 1470415 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT889499.1|), 
blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1127-1252, AM018700 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007411m10 
(emb|AM018700.1|), blast E-value=0, identity=100% 
               

               
               1127-1252, AM026126 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0007391p16 
(emb|AM026126.1|), blast E-value=0, identity=100% 
               

               
               1127-1252, AM026780 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0007391p16 
(emb|AM026780.1|), blast E-value=0, identity=100% 
               

               
               1127-1252, CR938831 Normalized and Subtracted bovine embryonic and 
(emb|CR938831.1|), blast E-value=0, identity=100% 
               

               
               1127-1252, UMC-bof_0B02-022-e06 Ovarian follicle recruited bof Bos taurus cDNA 
(gb|DN823793.1|), blast E-value=0, identity=100% 
               

               
               1127-1252, 1470415 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT889499.1|), 
blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_203504, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_203504, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1110-1252, gnl|bosTau2|chr15 (35718267-35718126)
               

               
               1110-1252, gnl|Hg17|chr4 (76925391-76925258)
               

               
               1110-1252, gnl|Mm7|chrX (21949002-21949130)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1110-1252, gnl|bosTau2|chr15 (35718267-35718126)
               

               
               1110-1252, gnl|Hg17|chr4 (76925391-76925258)
               

               
               1110-1252, gnl|Mm7|chrX (21949002-21949130)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	1127-1252, AM018700 KN-252-liver, Bos taurus Bos taurus cDNA clone C0007411m10 (emb\|AM018700.1\|), blast E-value=0, identity=100%
	1127-1252, AM026126 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0007391p16 (emb\|AM026126.1\|), blast E-value=0, identity=100%
	1127-1252, AM026780 KN-252-lymph, Bos taurus Bos taurus cDNA clone C0007391p16 (emb\|AM026780.1\|), blast E-value=0, identity=100%
	1127-1252, CR938831 Normalized and Subtracted bovine embryonic and (emb\|CR938831.1\|), blast E-value=0, identity=100%
	1127-1252, UMC-bof_0B02-022-e06 Ovarian follicle recruited bof Bos taurus cDNA (gb\|DN823793.1\|), blast E-value=0, identity=100%
	1127-1252, 1470415 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DT889499.1\|), blast E-value=0, identity=100%

	1110-1252, gnl\|bosTau2\|chr15 (35718267-35718126)
	1110-1252, gnl\|Hg17\|chr4 (76925391-76925258)
	1110-1252, gnl\|Mm7\|chrX (21949002-21949130)

	fhi (0.339155)
	ece (0.229305)
	tes (0.207814)
	col (0.195008)
	ldo (0.194005)
	ton (0.1755)
	tbr (0.154178)
	bfe (0.149858)
	ste (0.135208)
	nbm (0.0993246)
	jej (0.0989218)